#!/usr/bin/env bash set -euo pipefail SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" ROOT_DIR="$(cd "${SCRIPT_DIR}/.." && pwd)" COMPOSE_FILE="${COMPOSE_FILE:-${ROOT_DIR}/docker-compose.yml}" BASE_URL="${BASE_URL:-http://localhost:5270}" ES_URL="${ES_URL:-http://localhost:9200}" REDIS_PORT="${REDIS_PORT:-6382}" PGHOST="${PGHOST:-localhost}" PGPORT="${PGPORT:-5436}" PGDATABASE="${PGDATABASE:-vigilcare}" PGUSER="${PGUSER:-postgres}" PGPASSWORD="${PGPASSWORD:-password}" TEST_PROJECT="${TEST_PROJECT:-${ROOT_DIR}/VigilCareClinicalAPI.Tests/VigilCareClinicalAPI.Tests.csproj}" TEST_FILTER="${TEST_FILTER:-FullyQualifiedName~News2}" FULL_TEST="${FULL_TEST:-0}" NEWS2_CONSUMER_GROUP="${NEWS2_CONSUMER_GROUP:-news2-scoring}" ES_CONSUMER_GROUP="${ES_CONSUMER_GROUP:-es-indexer}" OUTBOX_RELAY_GROUP="${OUTBOX_RELAY_GROUP:-}" NEWS2_WAIT_SECS="${NEWS2_WAIT_SECS:-60}" INDEX_WAIT_SECS="${INDEX_WAIT_SECS:-60}" SCRIPT_RUN_ID="$(date -u +"%Y%m%d%H%M%S")" RECORDED_AT="$(date -u +"%Y-%m-%dT%H:%M:%SZ")" TMP_FILES=() cleanup() { local f for f in "${TMP_FILES[@]}"; do rm -f "${f}" "${f}.status" 2>/dev/null || true done } trap cleanup EXIT need() { command -v "$1" >/dev/null 2>&1 || { echo "Missing dependency: $1" exit 1 } } need curl need jq need dotnet if ! command -v docker >/dev/null 2>&1 || [[ ! -f "${COMPOSE_FILE}" ]]; then echo "Missing dependency: docker compose (${COMPOSE_FILE})" exit 1 fi compose() { docker compose -f "${COMPOSE_FILE}" "$@" } kafka_exec() { compose exec -T kafka "$@" } redis_cmd() { if command -v redis-cli >/dev/null 2>&1; then redis-cli -p "${REDIS_PORT}" "$@" else compose exec -T redis redis-cli "$@" fi } psql_cmd() { local sql="$1" if command -v psql >/dev/null 2>&1; then PGPASSWORD="${PGPASSWORD}" psql -h "${PGHOST}" -p "${PGPORT}" -U "${PGUSER}" -d "${PGDATABASE}" -tAc "${sql}" else compose exec -T postgres psql -U "${PGUSER}" -d "${PGDATABASE}" -tAc "${sql}" fi } request() { local method="$1" local url="$2" local body="${3:-}" local tmp tmp="$(mktemp)" TMP_FILES+=("${tmp}") local status if [[ -n "${body}" ]]; then status="$(curl -sS -o "${tmp}" -w "%{http_code}" -X "${method}" "${url}" \ -H "Content-Type: application/json" -d "${body}")" else status="$(curl -sS -o "${tmp}" -w "%{http_code}" -X "${method}" "${url}")" fi echo "${status}" > "${tmp}.status" echo "${tmp}" } assert_status() { local expected="$1" local body_file="$2" local status status="$(<"${body_file}.status")" if [[ "${status}" != "${expected}" ]]; then echo "Expected HTTP ${expected}, got ${status}" cat "${body_file}" echo exit 1 fi } consumer_group_lag() { local group="$1" kafka_exec /opt/kafka/bin/kafka-consumer-groups.sh \ --bootstrap-server localhost:9092 \ --describe \ --group "${group}" 2>/dev/null | \ awk 'NR > 1 && $1 != "" { sum += $6 } END { print sum + 0 }' } wait_for_consumer_lag_zero() { local group="$1" local max_secs="$2" local elapsed=0 local lag="unknown" while (( elapsed < max_secs )); do lag="$(consumer_group_lag "${group}")" if [[ "${lag}" == "0" ]]; then return 0 fi sleep 2 elapsed=$((elapsed + 2)) done echo "Consumer group ${group} lag did not reach zero within ${max_secs}s (lag=${lag})" exit 1 } wait_for_news2_score() { local encounter_id="$1" local max_secs="$2" local elapsed=0 local row="" while (( elapsed < max_secs )); do row="$(psql_cmd "SELECT total_score, risk_level FROM news2_scores WHERE encounter_id = '${encounter_id}' ORDER BY calculated_at DESC LIMIT 1")" if [[ -n "${row}" ]]; then echo "${row}" return 0 fi sleep 2 elapsed=$((elapsed + 2)) done echo "No news2_scores row for encounter ${encounter_id} within ${max_secs}s" exit 1 } wait_for_es_news2_fields() { local encounter_id="$1" local max_secs="$2" local elapsed=0 local score="" local risk="" while (( elapsed < max_secs )); do local body body="$(curl -sS "${ES_URL}/patient_encounters/_source/${encounter_id}" 2>/dev/null || true)" if [[ -n "${body}" && "${body}" != *"\"found\":false"* ]]; then score="$(jq -r '.news2Score // empty' <<< "${body}")" risk="$(jq -r '.news2RiskLevel // empty' <<< "${body}")" if [[ -n "${score}" && -n "${risk}" ]]; then echo "${score}"$'\t'"${risk}" return 0 fi fi sleep 2 elapsed=$((elapsed + 2)) done echo "patient_encounters document missing news2Score/news2RiskLevel for ${encounter_id} within ${max_secs}s" exit 1 } TOTAL_STEPS=8 echo "Phase 12 verification starting..." echo "Repo root: ${ROOT_DIR}" echo "API: ${BASE_URL}" echo "[1/${TOTAL_STEPS}] Preflight API, Elasticsearch, PostgreSQL, Redis, Kafka" api_status="$(curl -sS -o /dev/null -w "%{http_code}" "${BASE_URL}/api/v1/alert-thresholds" || true)" es_status="$(curl -sS -o /dev/null -w "%{http_code}" "${ES_URL}/_cluster/health" || true)" [[ "${api_status}" == "200" ]] || { echo "API not ready (${api_status}) — run docker compose up -d and dotnet run"; exit 1; } [[ "${es_status}" == "200" ]] || { echo "Elasticsearch not ready (${es_status})"; exit 1; } redis_cmd PING >/dev/null || { echo "Redis not reachable on port ${REDIS_PORT}"; exit 1; } psql_cmd "SELECT 1" >/dev/null || { echo "PostgreSQL not reachable"; exit 1; } kafka_exec /opt/kafka/bin/kafka-broker-api-versions.sh --bootstrap-server localhost:9092 >/dev/null || { echo "Kafka not ready" exit 1 } redis_cmd EXISTS "threshold:HEART_RATE" | grep -q '^1$' || { echo "Missing Redis threshold:HEART_RATE — restart API to run ThresholdCacheLoader" exit 1 } echo "OK: infrastructure preflight passed" echo "[2/${TOTAL_STEPS}] Create patient and active encounter" patient_payload="$(jq -nc \ --arg fn "Phase12" \ --arg ln "Verify${SCRIPT_RUN_ID}" \ '{firstName:$fn,lastName:$ln,dateOfBirth:"1985-06-01",gender:"M"}')" patient_resp="$(request POST "${BASE_URL}/api/v1/patients" "${patient_payload}")" assert_status "201" "${patient_resp}" patient_id="$(jq -r '.data.id' "${patient_resp}")" enc_payload='{"encounterType":"Inpatient","department":"ICU","attendingPhysician":"Dr. Phase12"}' enc_resp="$(request POST "${BASE_URL}/api/v1/patients/${patient_id}/encounters" "${enc_payload}")" assert_status "201" "${enc_resp}" encounter_id="$(jq -r '.data.id' "${enc_resp}")" echo "OK: patient=${patient_id} encounter=${encounter_id}" echo "[3/${TOTAL_STEPS}] Ingest all 7 NEWS2 parameters (medium risk, total score 6)" news2_payload="$(jq -nc \ --arg recordedAt "${RECORDED_AT}" \ '{observations:[ {"observationCode":"RESP_RATE","value":22,"unit":"breaths/min","source":"DEVICE","recordedAt":$recordedAt}, {"observationCode":"SPO2","value":93,"unit":"%","source":"DEVICE","recordedAt":$recordedAt}, {"observationCode":"SYSTOLIC_BP","value":105,"unit":"mmHg","source":"DEVICE","recordedAt":$recordedAt}, {"observationCode":"HEART_RATE","value":95,"unit":"bpm","source":"DEVICE","recordedAt":$recordedAt}, {"observationCode":"AVPU","value":0,"unit":"score","source":"MANUAL","recordedAt":$recordedAt}, {"observationCode":"TEMP_C","value":37.0,"unit":"°C","source":"DEVICE","recordedAt":$recordedAt}, {"observationCode":"SUPPLEMENTAL_O2","value":0,"unit":"flag","source":"MANUAL","recordedAt":$recordedAt} ]}')" obs_resp="$(request POST "${BASE_URL}/api/v1/encounters/${encounter_id}/observations" "${news2_payload}")" assert_status "201" "${obs_resp}" echo "OK: 7 observations ingested" echo "[4/${TOTAL_STEPS}] Wait for news2-scoring and verify PostgreSQL score + NEWS2_WARNING alert" wait_for_consumer_lag_zero "${NEWS2_CONSUMER_GROUP}" "${NEWS2_WAIT_SECS}" score_row="$(wait_for_news2_score "${encounter_id}" "${NEWS2_WAIT_SECS}")" total_score="${score_row%%|*}" risk_level="$(echo "${score_row}" | cut -d'|' -f2)" [[ "${total_score}" == "6" ]] || { echo "Expected total_score=6 in PostgreSQL, got ${total_score}" exit 1 } [[ "${risk_level}" == "MEDIUM" ]] || { echo "Expected risk_level=MEDIUM in PostgreSQL, got ${risk_level}" exit 1 } warning_count="$(psql_cmd "SELECT COUNT(*) FROM clinical_alerts WHERE encounter_id = '${encounter_id}' AND alert_type = 'NEWS2_WARNING' AND severity = 'WARNING' AND status = 'OPEN'")" [[ "${warning_count}" == "1" ]] || { echo "Expected 1 NEWS2_WARNING alert in PostgreSQL, found ${warning_count}" psql_cmd "SELECT alert_type, severity, status FROM clinical_alerts WHERE encounter_id = '${encounter_id}'" || true exit 1 } echo "OK: PostgreSQL news2_scores total=6 risk=MEDIUM and NEWS2_WARNING alert exists" echo "[5/${TOTAL_STEPS}] Verify NEWS2 API endpoints (current + history)" current_resp="$(request GET "${BASE_URL}/api/v1/encounters/${encounter_id}/news2/current")" assert_status "200" "${current_resp}" [[ "$(jq -r '.data.totalScore' "${current_resp}")" == "6" ]] || { echo "Expected current totalScore=6" cat "${current_resp}" exit 1 } [[ "$(jq -r '.data.riskLevel' "${current_resp}")" == "MEDIUM" ]] || { echo "Expected current riskLevel=MEDIUM" cat "${current_resp}" exit 1 } [[ "$(jq -r '.data.respRateScore' "${current_resp}")" == "2" ]] || { echo "Expected respRateScore=2" cat "${current_resp}" exit 1 } [[ "$(jq -r '.data.spo2Score' "${current_resp}")" == "2" ]] || { echo "Expected spo2Score=2" cat "${current_resp}" exit 1 } history_resp="$(request GET "${BASE_URL}/api/v1/encounters/${encounter_id}/news2/history")" assert_status "200" "${history_resp}" history_count="$(jq -r '.data.items | length' "${history_resp}")" [[ "${history_count}" -ge 1 ]] || { echo "Expected at least one history entry" cat "${history_resp}" exit 1 } echo "OK: news2/current and news2/history return expected data" echo "[6/${TOTAL_STEPS}] Wait for es-indexer and verify Elasticsearch projection" wait_for_consumer_lag_zero "${ES_CONSUMER_GROUP}" "${INDEX_WAIT_SECS}" es_row="$(wait_for_es_news2_fields "${encounter_id}" "${INDEX_WAIT_SECS}")" es_score="${es_row%%$'\t'*}" es_risk="${es_row#*$'\t'}" [[ "${es_score}" == "6" ]] || { echo "Expected Elasticsearch news2Score=6, got ${es_score}" exit 1 } [[ "${es_risk}" == "MEDIUM" ]] || { echo "Expected Elasticsearch news2RiskLevel=MEDIUM, got ${es_risk}" exit 1 } echo "OK: patient_encounters has news2Score=6 and news2RiskLevel=MEDIUM" echo "[7/${TOTAL_STEPS}] Verify Prometheus NEWS2 metrics" metrics_file="$(mktemp)" TMP_FILES+=("${metrics_file}") curl -sS "${BASE_URL}/metrics" -o "${metrics_file}" grep -q '^news2_scores_total{' "${metrics_file}" || { echo "Expected news2_scores_total counter line in /metrics" grep 'news2' "${metrics_file}" || true exit 1 } grep -q '^news2_scoring_duration_seconds_bucket{' "${metrics_file}" || { echo "Expected news2_scoring_duration_seconds_bucket in /metrics" exit 1 } grep -q 'news2_scores_total{risk_level="MEDIUM"}' "${metrics_file}" || { echo "Expected news2_scores_total{risk_level=\"MEDIUM\"} in /metrics" grep 'news2_scores_total' "${metrics_file}" || true exit 1 } echo "OK: NEWS2 Prometheus metrics exposed" echo "[8/${TOTAL_STEPS}] Run NEWS2 test suite" dotnet test "${TEST_PROJECT}" --filter "${TEST_FILTER}" if [[ "${FULL_TEST}" == "1" ]]; then echo "Running full test suite (FULL_TEST=1)" dotnet test "${ROOT_DIR}/VigilCareClinicalAPI.sln" 2>/dev/null || dotnet test "${ROOT_DIR}" fi echo echo "Phase 12 verification checks passed." echo "Encounter id: ${encounter_id}"