feature: Observation Ingest, Synchronous Alert Detection, and Alert Lifecycle

This commit is contained in:
voltsrage
2026-06-16 21:05:06 +08:00
parent 882d4af3e6
commit de603df151
26 changed files with 1471 additions and 5 deletions
@@ -0,0 +1 @@
public record CursorPage<T>(List<T> Items, string? NextCursor, bool HasMore);
@@ -0,0 +1,156 @@
using Microsoft.AspNetCore.Mvc;
/// <summary>
/// Clinical alert listing, acknowledgment, and resolution.
/// </summary>
[ApiController]
[Produces("application/json")]
public class AlertsController : ControllerBase
{
private readonly IAlertService _alerts;
public AlertsController(IAlertService alerts) => _alerts = alerts;
/// <summary>
/// Lists alerts for a single encounter with optional status filter.
/// </summary>
/// <param name="encounterId">Encounter id.</param>
/// <param name="status">Optional status filter (DB literal, e.g. OPEN).</param>
/// <param name="page">Page number (1-based).</param>
/// <param name="pageSize">Results per page.</param>
/// <returns>A paginated list of alerts for the encounter.</returns>
[HttpGet("api/v1/encounters/{encounterId:guid}/alerts")]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status200OK)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status400BadRequest)]
public async Task<IActionResult> ListByEncounter(
Guid encounterId,
[FromQuery] string? status,
[FromQuery] int page = 1,
[FromQuery] int pageSize = 20)
{
AlertStatus? parsedStatus = null;
if (!string.IsNullOrEmpty(status))
{
try
{
parsedStatus = AlertStatusExtensions.FromDbString(status);
}
catch (ArgumentOutOfRangeException)
{
return BadRequest(ApiResponse<object>.Fail(400, "Invalid status filter.", "INVALID_STATUS"));
}
}
var result = await _alerts.ListByEncounterAsync(encounterId, parsedStatus, page, pageSize);
return Ok(ApiResponse<object>.Ok(new
{
items = result.Items,
page = result.Page,
pageSize = result.PageSize,
totalCount = result.TotalCount,
totalPages = result.TotalPages
}));
}
/// <summary>
/// Lists alerts across all encounters with optional status, severity, and department filters.
/// </summary>
/// <param name="status">Optional status filter (DB literal, e.g. OPEN).</param>
/// <param name="severity">Optional severity filter (DB literal, e.g. CRITICAL).</param>
/// <param name="department">Optional department filter.</param>
/// <param name="page">Page number (1-based).</param>
/// <param name="pageSize">Results per page.</param>
/// <returns>A paginated list of alerts.</returns>
[HttpGet("api/v1/alerts")]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status200OK)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status400BadRequest)]
public async Task<IActionResult> ListGlobal(
[FromQuery] string? status,
[FromQuery] string? severity,
[FromQuery] string? department,
[FromQuery] int page = 1,
[FromQuery] int pageSize = 20)
{
AlertStatus? parsedStatus = null;
if (!string.IsNullOrEmpty(status))
{
try
{
parsedStatus = AlertStatusExtensions.FromDbString(status);
}
catch (ArgumentOutOfRangeException)
{
return BadRequest(ApiResponse<object>.Fail(400, "Invalid status filter.", "INVALID_STATUS"));
}
}
AlertSeverity? parsedSeverity = null;
if (!string.IsNullOrEmpty(severity))
{
try
{
parsedSeverity = AlertSeverityExtensions.FromDbString(severity);
}
catch (ArgumentOutOfRangeException)
{
return BadRequest(ApiResponse<object>.Fail(400, "Invalid severity filter.", "INVALID_SEVERITY"));
}
}
var result = await _alerts.ListGlobalAsync(parsedStatus, parsedSeverity, department, page, pageSize);
return Ok(ApiResponse<object>.Ok(new
{
items = result.Items,
page = result.Page,
pageSize = result.PageSize,
totalCount = result.TotalCount,
totalPages = result.TotalPages
}));
}
/// <summary>
/// Gets a single alert by id, including its encounter.
/// </summary>
/// <param name="id">Alert id.</param>
/// <returns>The alert record.</returns>
[HttpGet("api/v1/alerts/{id:guid}")]
[ProducesResponseType(typeof(ApiResponse<ClinicalAlert>), StatusCodes.Status200OK)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status404NotFound)]
public async Task<IActionResult> Get(Guid id)
{
var alert = await _alerts.GetByIdAsync(id);
return Ok(ApiResponse<ClinicalAlert>.Ok(alert));
}
/// <summary>
/// Acknowledges an open or escalated alert and emits an outbox event for downstream consumers.
/// </summary>
/// <param name="id">Alert id.</param>
/// <param name="req">Clinician id and optional note.</param>
/// <returns>The updated alert.</returns>
[HttpPost("api/v1/alerts/{id:guid}/acknowledge")]
[ProducesResponseType(typeof(ApiResponse<ClinicalAlert>), StatusCodes.Status200OK)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status404NotFound)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status409Conflict)]
public async Task<IActionResult> Acknowledge(Guid id, [FromBody] AcknowledgeAlertRequest req)
{
var alert = await _alerts.AcknowledgeAsync(id, req);
return Ok(ApiResponse<ClinicalAlert>.Ok(alert));
}
/// <summary>
/// Resolves an acknowledged alert.
/// </summary>
/// <param name="id">Alert id.</param>
/// <returns>The updated alert.</returns>
[HttpPost("api/v1/alerts/{id:guid}/resolve")]
[ProducesResponseType(typeof(ApiResponse<ClinicalAlert>), StatusCodes.Status200OK)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status404NotFound)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status409Conflict)]
public async Task<IActionResult> Resolve(Guid id)
{
var alert = await _alerts.ResolveAsync(id);
return Ok(ApiResponse<ClinicalAlert>.Ok(alert));
}
}
@@ -0,0 +1,87 @@
using Microsoft.AspNetCore.Mvc;
/// <summary>
/// Observation ingest and cursor-paginated history for an encounter.
/// </summary>
[ApiController]
[Route("api/v1/encounters/{encounterId:guid}/observations")]
[Produces("application/json")]
public class ObservationsController : ControllerBase
{
private readonly IObservationService _ingest;
private readonly IObservationQueryService _query;
public ObservationsController(IObservationService ingest, IObservationQueryService query)
{
_ingest = ingest;
_query = query;
}
/// <summary>
/// Ingests one to ten observations for an encounter in a single request.
/// </summary>
/// <param name="encounterId">Encounter id.</param>
/// <param name="req">Batch of observations to record.</param>
/// <returns>Per-observation ingest results, including any generated alerts.</returns>
[HttpPost]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status201Created)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status400BadRequest)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status404NotFound)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status409Conflict)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status422UnprocessableEntity)]
public async Task<IActionResult> Ingest(Guid encounterId, [FromBody] BatchIngestRequest req)
{
if (req.Observations.Count == 0)
return BadRequest(ApiResponse<object>.Fail(400, "At least one observation is required.", "EMPTY_BATCH"));
if (req.Observations.Count > 10)
return BadRequest(ApiResponse<object>.Fail(400,
"Batch size cannot exceed 10 observations.", "BATCH_TOO_LARGE"));
var results = new List<object>();
foreach (var obs in req.Observations)
{
var result = await _ingest.IngestAsync(encounterId, obs);
results.Add(new
{
observation = result.Observation,
alertGenerated = result.AlertCreated is not null,
alertId = result.AlertCreated?.Id,
duplicate = result.IsDuplicate
});
}
return StatusCode(201, ApiResponse<object>.Created(
req.Observations.Count == 1 ? (object)results[0] : results));
}
/// <summary>
/// Returns cursor-paginated observation history for an encounter.
/// </summary>
/// <param name="encounterId">Encounter id.</param>
/// <param name="code">Optional observation code filter.</param>
/// <param name="from">Optional start of recorded-at range.</param>
/// <param name="to">Optional end of recorded-at range.</param>
/// <param name="limit">Maximum items per page.</param>
/// <param name="cursor">Opaque cursor from a previous page.</param>
/// <returns>A page of observations with an optional next cursor.</returns>
[HttpGet]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status200OK)]
public async Task<IActionResult> History(
Guid encounterId,
[FromQuery] string? code,
[FromQuery] DateTimeOffset? from,
[FromQuery] DateTimeOffset? to,
[FromQuery] int limit = 50,
[FromQuery] string? cursor = null)
{
var page = await _query.GetHistoryAsync(encounterId, code, from, to, limit, cursor);
return Ok(ApiResponse<object>.Ok(new
{
items = page.Items,
nextCursor = page.NextCursor,
hasMore = page.HasMore
}));
}
}
@@ -0,0 +1 @@
public record AcknowledgeAlertRequest(string ClinicianId, string? Note);
@@ -0,0 +1 @@
public record BatchIngestRequest(List<IngestObservationRequest> Observations);
@@ -0,0 +1,8 @@
public record IngestObservationRequest(
string ObservationCode,
decimal Value,
string Unit,
ObservationSource Source,
DateTimeOffset RecordedAt,
string? IdempotencyKey
);
@@ -0,0 +1,8 @@
public record IngestResult(Observation Observation, ClinicalAlert? AlertCreated, bool IsDuplicate = false)
{
public static IngestResult Created(Observation obs, ClinicalAlert? alert) =>
new(obs, alert, false);
public static IngestResult Duplicate(Observation obs) =>
new(obs, null, true);
}
@@ -0,0 +1,25 @@
using System.Text;
using System.Text.Json;
public record ObservationCursor(DateTimeOffset RecordedAt, Guid Id)
{
public string Encode()
{
var json = JsonSerializer.Serialize(this);
return Convert.ToBase64String(Encoding.UTF8.GetBytes(json));
}
public static ObservationCursor? Decode(string? encoded)
{
if (string.IsNullOrEmpty(encoded)) return null;
try
{
var json = Encoding.UTF8.GetString(Convert.FromBase64String(encoded));
return JsonSerializer.Deserialize<ObservationCursor>(json);
}
catch
{
return null;
}
}
}
@@ -0,0 +1,6 @@
public record ThresholdCacheEntry(
string ObservationCode,
decimal? CriticalLow,
decimal? WarningLow,
decimal? WarningHigh,
decimal? CriticalHigh);
+19 -5
View File
@@ -1,6 +1,7 @@
using Microsoft.EntityFrameworkCore;
using Serilog;
using StackExchange.Redis;
using System.Text.Json.Serialization;
Log.Logger = new LoggerConfiguration()
.WriteTo.Console()
@@ -18,23 +19,33 @@ try
builder.Services.AddDbContext<AppDbContext>(opts =>
opts.UseNpgsql(builder.Configuration.GetConnectionString("DefaultConnection")));
builder.Services.AddSingleton<IConnectionMultiplexer>(
ConnectionMultiplexer.Connect(builder.Configuration["Redis:ConnectionString"]!));
builder.Services.AddSingleton<IConnectionMultiplexer>(sp =>
ConnectionMultiplexer.Connect(sp.GetRequiredService<IConfiguration>()["Redis:ConnectionString"]!));
builder.Services.AddScoped<IPatientService, PatientService>();
builder.Services.AddScoped<IEncounterService, EncounterService>();
builder.Services.AddScoped<IAlertThresholdService, AlertThresholdService>();
builder.Services.AddScoped<IObservationService, ObservationService>();
builder.Services.AddScoped<IObservationQueryService, ObservationQueryService>();
builder.Services.AddScoped<IAlertService, AlertService>();
builder.Services.AddHostedService<ThresholdCacheLoader>();
builder.Services.AddControllers();
builder.Services.AddControllers()
.AddJsonOptions(opts =>
{
opts.JsonSerializerOptions.ReferenceHandler = ReferenceHandler.IgnoreCycles;
opts.JsonSerializerOptions.Converters.Add(new JsonStringEnumConverter());
opts.JsonSerializerOptions.Converters.Add(new ObservationSourceJsonConverter());
});
builder.Services.AddEndpointsApiExplorer();
builder.Services.AddSwaggerGen();
var app = builder.Build();
using (var scope = app.Services.CreateScope())
if (!app.Environment.IsEnvironment("Testing"))
{
using var scope = app.Services.CreateScope();
var db = scope.ServiceProvider.GetRequiredService<AppDbContext>();
var redis = scope.ServiceProvider.GetRequiredService<IConnectionMultiplexer>();
await DataSeeder.SeedAsync(db, redis);
@@ -71,8 +82,11 @@ catch (HostAbortedException)
catch (Exception ex)
{
Log.Fatal(ex, "Application failed to start.");
throw;
}
finally
{
Log.CloseAndFlush();
}
}
public partial class Program { }
@@ -0,0 +1,123 @@
using System.Text.Json;
using Microsoft.EntityFrameworkCore;
public class AlertService : IAlertService
{
private readonly AppDbContext _db;
public AlertService(AppDbContext db) => _db = db;
public async Task<PagedResult<ClinicalAlert>> ListByEncounterAsync(
Guid encounterId, AlertStatus? status, int page, int pageSize)
{
var query = _db.ClinicalAlerts
.AsNoTracking()
.Where(a => a.EncounterId == encounterId);
if (status.HasValue)
query = query.Where(a => a.Status == status.Value);
var total = await query.CountAsync();
var alerts = await query
.OrderByDescending(a => a.TriggeredAt)
.Skip((page - 1) * pageSize)
.Take(pageSize)
.ToListAsync();
return new PagedResult<ClinicalAlert>(alerts, page, pageSize, total);
}
public async Task<PagedResult<ClinicalAlert>> ListGlobalAsync(
AlertStatus? status, AlertSeverity? severity, string? department, int page, int pageSize)
{
var query = _db.ClinicalAlerts
.AsNoTracking()
.Include(a => a.Encounter)
.AsQueryable();
if (status.HasValue)
query = query.Where(a => a.Status == status.Value);
if (severity.HasValue)
query = query.Where(a => a.Severity == severity.Value);
if (!string.IsNullOrEmpty(department))
query = query.Where(a => a.Encounter.Department == department);
var total = await query.CountAsync();
var alerts = await query
.OrderByDescending(a => a.TriggeredAt)
.Skip((page - 1) * pageSize)
.Take(pageSize)
.ToListAsync();
return new PagedResult<ClinicalAlert>(alerts, page, pageSize, total);
}
public async Task<ClinicalAlert> GetByIdAsync(Guid id)
{
var alert = await _db.ClinicalAlerts
.AsNoTracking()
.Include(a => a.Encounter)
.FirstOrDefaultAsync(a => a.Id == id);
if (alert is null)
throw new NotFoundException("Alert not found.", "ALERT_NOT_FOUND");
return alert;
}
public async Task<ClinicalAlert> AcknowledgeAsync(Guid id, AcknowledgeAlertRequest req)
{
var alert = await _db.ClinicalAlerts.FindAsync(id);
if (alert is null)
throw new NotFoundException("Alert not found.", "ALERT_NOT_FOUND");
if (alert.Status != AlertStatus.Open && alert.Status != AlertStatus.Escalated)
throw new ConflictException(
$"Alert cannot be acknowledged from status '{alert.Status}'.",
"ALERT_NOT_ACKNOWLEDGEABLE");
alert.Status = AlertStatus.Acknowledged;
alert.AcknowledgedAt = DateTimeOffset.UtcNow;
alert.AcknowledgedBy = req.ClinicianId;
// Write an outbox event so the Kafka consumer (Phase 6) can cancel the
// pending RabbitMQ escalation timer when it sees this acknowledgment.
_db.OutboxEvents.Add(new OutboxEvent
{
Id = Guid.NewGuid(),
Topic = "alert.acknowledged",
Payload = JsonSerializer.Serialize(new
{
alertId = alert.Id,
encounterId = alert.EncounterId,
acknowledgedBy = req.ClinicianId,
acknowledgedAt = alert.AcknowledgedAt,
note = req.Note
}),
CreatedAt = DateTimeOffset.UtcNow
});
await _db.SaveChangesAsync();
return alert;
}
public async Task<ClinicalAlert> ResolveAsync(Guid id)
{
var alert = await _db.ClinicalAlerts.FindAsync(id);
if (alert is null)
throw new NotFoundException("Alert not found.", "ALERT_NOT_FOUND");
if (alert.Status != AlertStatus.Acknowledged)
throw new ConflictException(
"Alert must be acknowledged before it can be resolved.",
"ALERT_NOT_ACKNOWLEDGED");
alert.Status = AlertStatus.Resolved;
alert.ResolvedAt = DateTimeOffset.UtcNow;
await _db.SaveChangesAsync();
return alert;
}
}
@@ -0,0 +1,14 @@
public interface IAlertService
{
Task<PagedResult<ClinicalAlert>> ListByEncounterAsync(
Guid encounterId, AlertStatus? status, int page, int pageSize);
Task<PagedResult<ClinicalAlert>> ListGlobalAsync(
AlertStatus? status, AlertSeverity? severity, string? department, int page, int pageSize);
Task<ClinicalAlert> GetByIdAsync(Guid id);
Task<ClinicalAlert> AcknowledgeAsync(Guid id, AcknowledgeAlertRequest req);
Task<ClinicalAlert> ResolveAsync(Guid id);
}
@@ -0,0 +1,10 @@
public interface IObservationQueryService
{
Task<CursorPage<Observation>> GetHistoryAsync(
Guid encounterId,
string? code,
DateTimeOffset? from,
DateTimeOffset? to,
int limit,
string? cursorToken);
}
@@ -0,0 +1,4 @@
public interface IObservationService
{
Task<IngestResult> IngestAsync(Guid encounterId, IngestObservationRequest req);
}
@@ -0,0 +1,59 @@
using Microsoft.EntityFrameworkCore;
public class ObservationQueryService : IObservationQueryService
{
private readonly AppDbContext _db;
public ObservationQueryService(AppDbContext db) => _db = db;
public async Task<CursorPage<Observation>> GetHistoryAsync(
Guid encounterId,
string? code,
DateTimeOffset? from,
DateTimeOffset? to,
int limit,
string? cursorToken)
{
limit = Math.Clamp(limit, 1, 100);
var cursor = ObservationCursor.Decode(cursorToken);
var query = _db.Observations
.AsNoTracking()
.Where(o => o.EncounterId == encounterId);
if (!string.IsNullOrEmpty(code))
query = query.Where(o => o.ObservationCode == code);
if (from.HasValue)
query = query.Where(o => o.RecordedAt >= from.Value);
if (to.HasValue)
query = query.Where(o => o.RecordedAt <= to.Value);
if (cursor is not null)
{
// Keyset condition for ORDER BY recorded_at DESC, id DESC:
// next page starts just below the cursor position
var cursorTime = cursor.RecordedAt;
var cursorId = cursor.Id;
query = query.Where(o =>
o.RecordedAt < cursorTime ||
(o.RecordedAt == cursorTime && o.Id.CompareTo(cursorId) < 0));
}
var items = await query
.OrderByDescending(o => o.RecordedAt)
.ThenByDescending(o => o.Id)
.Take(limit + 1) // fetch one extra to know if there is a next page
.ToListAsync();
var hasMore = items.Count > limit;
if (hasMore) items.RemoveAt(limit);
var nextCursor = hasMore
? new ObservationCursor(items[^1].RecordedAt, items[^1].Id).Encode()
: null;
return new CursorPage<Observation>(items, nextCursor, hasMore);
}
}
@@ -0,0 +1,215 @@
using System.Text.Json;
using Microsoft.EntityFrameworkCore;
using StackExchange.Redis;
public class ObservationService : IObservationService
{
private readonly AppDbContext _db;
private readonly IConnectionMultiplexer _redis;
private readonly ILogger<ObservationService> _logger;
public ObservationService(
AppDbContext db,
IConnectionMultiplexer redis,
ILogger<ObservationService> logger)
{
_db = db;
_redis = redis;
_logger = logger;
}
public async Task<IngestResult> IngestAsync(Guid encounterId, IngestObservationRequest req)
{
// Step 1 — encounter must be active
var encounter = await _db.Encounters
.AsNoTracking()
.FirstOrDefaultAsync(e => e.Id == encounterId);
if (encounter is null)
throw new NotFoundException("Encounter not found.", "ENCOUNTER_NOT_FOUND");
if (encounter.Status != EncounterStatus.Active)
throw new ConflictException(
$"Cannot record observations for an encounter with status '{encounter.Status}'.",
"ENCOUNTER_NOT_ACTIVE");
// Step 2 — idempotency check before entering the transaction
// The unique partial index is the database safety net for concurrent retries.
// The pre-check here avoids the exception-and-rollback path for the common retry case.
if (!string.IsNullOrEmpty(req.IdempotencyKey))
{
var existing = await _db.Observations
.AsNoTracking()
.FirstOrDefaultAsync(o => o.IdempotencyKey == req.IdempotencyKey);
if (existing is not null)
{
_logger.LogInformation(
"Duplicate idempotency key {Key} for encounter {EncounterId} — returning original",
req.IdempotencyKey, encounterId);
return IngestResult.Duplicate(existing);
}
}
// Step 3 — plausibility check
if (!PlausibilityValidator.IsPlausible(req.ObservationCode, req.Value, out var reason))
throw new ValidationException(reason!, "OBSERVATION_OUT_OF_PLAUSIBLE_RANGE");
// Steps 48 are one atomic transaction
await using var tx = await _db.Database.BeginTransactionAsync();
try
{
// Step 4 — insert observation
var observation = new Observation
{
Id = Guid.NewGuid(),
EncounterId = encounterId,
ObservationCode = req.ObservationCode,
Value = req.Value,
Unit = req.Unit,
Source = req.Source,
IdempotencyKey = req.IdempotencyKey,
RecordedAt = req.RecordedAt,
CreatedAt = DateTimeOffset.UtcNow
};
_db.Observations.Add(observation);
// Step 5 — load threshold from Redis; fall back to PostgreSQL on miss
var threshold = await LoadThresholdAsync(req.ObservationCode);
if (threshold is null)
throw new ValidationException(
$"No alert threshold is configured for observation code '{req.ObservationCode}'. " +
"Register a threshold before recording observations for this code.",
"UNKNOWN_OBSERVATION_CODE");
ClinicalAlert? alert = null;
// Step 6 — critical threshold detection (synchronous)
// WARNING detection is intentionally deferred to the Kafka consumer.
// A critical potassium of 2.1 mEq/L is immediately life-threatening — the alert
// must exist before this API call returns. A warning heart rate of 95 bpm warrants
// attention but not an emergency page; the additional Kafka latency is clinically safe.
if (IsCriticalBreach(req.Value, threshold))
{
alert = new ClinicalAlert
{
Id = Guid.NewGuid(),
EncounterId = encounterId,
PatientId = encounter.PatientId,
ObservationId = observation.Id,
AlertType = AlertTypeExtensions.CriticalFor(req.ObservationCode),
Severity = AlertSeverity.Critical,
Details = BuildCriticalDetails(req, threshold),
Status = AlertStatus.Open,
TriggeredAt = DateTimeOffset.UtcNow
};
_db.ClinicalAlerts.Add(alert);
// Step 6b — outbox event for the alert (relay picks this up in Phase 3)
_db.OutboxEvents.Add(BuildOutboxEvent("alert.generated", new
{
alertId = alert.Id,
encounterId,
patientId = encounter.PatientId,
alertType = alert.AlertType.ToDbString(),
severity = alert.Severity.ToDbString(),
triggeredAt = alert.TriggeredAt,
partitionKey = encounterId.ToString()
}));
}
// Step 7 — outbox event for the observation (always; Kafka consumer handles warnings)
_db.OutboxEvents.Add(BuildOutboxEvent("observation.recorded", new
{
observationId = observation.Id,
encounterId,
patientId = encounter.PatientId,
observationCode = req.ObservationCode,
value = req.Value,
unit = req.Unit,
source = req.Source.ToDbString(),
recordedAt = req.RecordedAt,
partitionKey = encounterId.ToString()
}));
// Step 8 — COMMIT
await _db.SaveChangesAsync();
await tx.CommitAsync();
_logger.LogInformation(
"Observation {ObservationId} ingested for encounter {EncounterId}. AlertCreated={AlertCreated}",
observation.Id, encounterId, alert is not null);
return IngestResult.Created(observation, alert);
}
catch (DbUpdateException ex) when (IsUniqueViolation(ex))
{
// Race condition: two concurrent retries both passed the pre-check above.
// The unique partial index caught it. Roll back and return the existing row.
await tx.RollbackAsync();
var existing = await _db.Observations
.AsNoTracking()
.FirstOrDefaultAsync(o => o.IdempotencyKey == req.IdempotencyKey);
if (existing is not null)
return IngestResult.Duplicate(existing);
throw new ConflictException("Concurrent duplicate submission.", "CONCURRENT_DUPLICATE");
}
catch
{
await tx.RollbackAsync();
throw;
}
}
private async Task<ThresholdCacheEntry?> LoadThresholdAsync(string observationCode)
{
var cache = _redis.GetDatabase();
var cacheKey = $"threshold:{observationCode}";
var cached = await cache.StringGetAsync(cacheKey);
if (cached.HasValue)
return JsonSerializer.Deserialize<ThresholdCacheEntry>(cached!);
// Cache miss — read from PostgreSQL and write back
var threshold = await _db.AlertThresholds
.AsNoTracking()
.FirstOrDefaultAsync(t => t.ObservationCode == observationCode);
if (threshold is null) return null;
var entry = new ThresholdCacheEntry(
threshold.ObservationCode,
threshold.CriticalLow,
threshold.WarningLow,
threshold.WarningHigh,
threshold.CriticalHigh);
await cache.StringSetAsync(cacheKey, JsonSerializer.Serialize(entry));
_logger.LogDebug("Cache miss for threshold {Code} — loaded from PostgreSQL", observationCode);
return entry;
}
private static bool IsCriticalBreach(decimal value, ThresholdCacheEntry t) =>
(t.CriticalLow.HasValue && value < t.CriticalLow.Value) ||
(t.CriticalHigh.HasValue && value > t.CriticalHigh.Value);
private static string BuildCriticalDetails(IngestObservationRequest req, ThresholdCacheEntry t)
{
if (t.CriticalLow.HasValue && req.Value < t.CriticalLow.Value)
return $"{req.ObservationCode} value {req.Value} {req.Unit} is below critical low of {t.CriticalLow} {req.Unit}.";
return $"{req.ObservationCode} value {req.Value} {req.Unit} is above critical high of {t.CriticalHigh} {req.Unit}.";
}
private static OutboxEvent BuildOutboxEvent(string topic, object payload) => new()
{
Id = Guid.NewGuid(),
Topic = topic,
Payload = JsonSerializer.Serialize(payload),
CreatedAt = DateTimeOffset.UtcNow
};
private static bool IsUniqueViolation(DbUpdateException ex) =>
ex.InnerException is Npgsql.PostgresException pg && pg.SqlState == "23505";
}
@@ -0,0 +1,35 @@
public static class PlausibilityValidator
{
// Plausible ranges define the outer boundary of physically possible values.
// These are NOT clinical thresholds — they catch device malfunctions and typos.
// A heart rate of 300 is clinically impossible; 150 is critical but possible.
private static readonly Dictionary<string, (decimal Min, decimal Max)> _ranges = new()
{
["HEART_RATE"] = (1, 300),
["TEMP_C"] = (20, 50),
["POTASSIUM_MEQ_L"] = (0.1m, 15),
["SPO2"] = (50, 100),
["RESP_RATE"] = (1, 80),
["WBC_K_UL"] = (0.1m, 500),
["GLUCOSE_MG_DL"] = (10, 1500),
};
public static bool IsPlausible(string observationCode, decimal value, out string? reason)
{
if (!_ranges.TryGetValue(observationCode, out var range))
{
// Unknown codes pass plausibility — threshold lookup will validate the code
reason = null;
return true;
}
if (value < range.Min || value > range.Max)
{
reason = $"Value {value} is outside the plausible range [{range.Min}{range.Max}] for {observationCode}.";
return false;
}
reason = null;
return true;
}
}
@@ -0,0 +1,14 @@
{
"Serilog": {
"Using": [ "Serilog.Sinks.Console" ],
"MinimumLevel": {
"Default": "Warning",
"Override": {
"Microsoft.AspNetCore": "Warning"
}
},
"WriteTo": [
{ "Name": "Console" }
]
}
}