test: run verification test

This commit is contained in:
voltsrage
2026-06-18 16:16:57 +08:00
parent 7d9e53fb8d
commit ddde7fee31
2 changed files with 395 additions and 8 deletions
+61 -8
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@@ -50,7 +50,9 @@ An `OutboxEvent` is written in the same transaction as any observation or alert,
- **Patient Registration** — register patients with MRN generation; optional blood type, allergies, and emergency contact; paginated list with name (`ILIKE`) and MRN (exact) search; patient detail with active encounter summary
- **Encounter Management** — open encounters against a patient with optional room/bed and admission reason; encounter status state machine (`scheduled → active → discharged / cancelled`) with 409 on illegal transitions; optional discharge diagnosis on discharge; encounter timeline as a merged chronological view across status changes, observation summaries, and alerts
- **Alert Threshold Management** — configure per-observation-code numeric bounds (`criticalLow`, `warningLow`, `warningHigh`, `criticalHigh`) for 12 observation codes; thresholds pre-loaded into Redis on startup; write-through cache invalidation on update
- **Observation Ingest** — `POST /encounters/:id/observations` accepts single or small batch (up to 10); idempotency via `Idempotency-Key` header (partial unique index); plausibility validation per observation code; synchronous critical alert creation within the ingest transaction; warning breach deferred to Kafka consumer; outbox event written in the same commit; cursor-paginated history on `(encounter_id, observation_code, recorded_at DESC)`
- **Observation Ingest** — `POST /encounters/:id/observations` accepts single or small batch (up to 10); idempotency via `Idempotency-Key` header (partial unique index); plausibility validation per observation code; synchronous critical alert creation within the ingest transaction; warning-range breaches evaluated asynchronously by `WarningAlertService` (Kafka consumer group `warning-evaluator`); outbox event written in the same commit; cursor-paginated history on `(encounter_id, observation_code, recorded_at DESC)`
- **Warning Threshold Alerts** — `WarningEvaluator` reads thresholds from Redis; creates `WARNING`-severity alerts for values above `warningHigh` or below `warningLow` that are not also critical breaches; idempotent `INSERT WHERE NOT EXISTS` per encounter and alert type while status is `OPEN` or `ACKNOWLEDGED`; warning alerts are indexed in Elasticsearch but not published to the RabbitMQ paging queue
- **Clinical Order Management** — `POST /encounters/:id/orders` create; `GET /encounters/:id/orders` list with optional status filter; `GET /orders/:id` detail; `PATCH /orders/:id/status` status transitions; `PATCH /orders/:id/result` record result and transition to `Resulted`; status machine enforces `Pending → InProgress → Resulted` and terminal `Cancelled`
- **Clinical Alert Lifecycle** — paginated alert list per encounter and globally; acknowledge with clinician ID and optional note; resolve (must be acknowledged first); global list filterable by status, severity, and department
- **Outbox Relay** — `IHostedService` polling every 500ms; reads unprocessed outbox rows, publishes to Kafka, marks processed; partitioned by `encounterId` for per-encounter ordering
- **Kafka Pipeline** — three topics (`observation.recorded`, `alert.generated`, `encounter.status.changed`) with six partitions each; KRaft mode, no Zookeeper; `KAFKA_AUTO_CREATE_TOPICS_ENABLE=false` — topics are provisioned explicitly by `KafkaTopicProvisioner`
@@ -59,7 +61,8 @@ An `OutboxEvent` is written in the same transaction as any observation or alert,
- **RabbitMQ Notification Workers** — `NotificationPublisherService` reads `alert.generated` from Kafka and publishes paging jobs to `alerts.paging.queue`; `PagingWorkerService` sends the page and waits for acknowledgment; if no ack arrives before timeout it NACKs to `alerts.paging.dlq` with `x-message-ttl = 300000ms`; if the host is stopping, in-flight paging messages are NACKed with `requeue=true` so they are retried after restart and do not false-escalate; `EscalationWorkerService` pages the on-call backup and sets alert status to `escalated`; `DischargeSummaryWorkerService` reads `encounter.status.changed`, generates a discharge summary, and stores it in MinIO under `/discharge-summaries/{encounterId}/summary.pdf`
- **Data Lake Writer** — `DataLakeWriterService` (consumer group `data-lake-writer`) buffers `observation.recorded`, `alert.generated`, and `encounter.status.changed` events, flushes date-partitioned Parquet files to MinIO (`/observations/`, `/alerts/`, `/encounters/`), and commits Kafka offsets only after successful uploads; `kafka_partition` and `kafka_offset` columns provide audit lineage
- **Reconciliation Jobs** — three scheduled checks: (1) unacknowledged CRITICAL alerts older than 30 minutes, (2) pending orders without results after 4 hours, (3) active inpatients with no observation in 2 hours; each finding creates a `reconciliation_alerts` row and publishes to RabbitMQ
- **Standard Envelope** — all responses use a consistent `{ success, statusCode, data, error }` wrapper; validation errors use the same shape; `ApiBehaviorOptions` overridden so model validation also produces the standard envelope
- **Standard Envelope** — all responses use a consistent `{ success, statusCode, data, error }` wrapper; validation errors use the same shape; `ApiBehaviorOptions` overridden so model validation also produces the standard envelope with field-level `details`
- **Input Validation** — FluentValidation validators on all request DTOs (patient registration, encounter open, observation ingest, alert acknowledge, alert thresholds, orders); invalid requests return 400 before reaching the service layer
- **Observability** — Serilog structured logging enriched with `correlationId`, `encounterId`, `patientId` on alert paths; Seq sink (`http://localhost:5345`); Prometheus (`http://localhost:9101`) scrapes `GET /metrics`; eight application metric families via `ClinicalMetrics` and three background collectors (`AlertsUnacknowledgedCollector`, `OutboxPendingCollector`, `KafkaConsumerLagCollector`); Grafana clinical dashboard (`http://localhost:3101`, admin/admin) with `alerts_unacknowledged_gauge` as the primary safety panel; per-request correlation IDs in request logs and `X-Correlation-Id` response headers
- **Swagger UI** — OpenAPI spec via Swashbuckle (Development only)
@@ -85,6 +88,7 @@ IHostedServices (background):
OutboxRelayService → PostgreSQL outbox → Kafka (every 500ms)
EsIndexerService → Kafka → Elasticsearch (consumer group: es-indexer)
SepsisEngineService → Kafka → Redis SIRS state → PostgreSQL alert (consumer group: sepsis-engine)
WarningAlertService → Kafka → WarningEvaluator → PostgreSQL WARNING alert (consumer group: warning-evaluator)
NotificationPublisherService → Kafka → RabbitMQ paging.queue (consumer group: notification-publisher)
PagingWorkerService → RabbitMQ paging.queue → log page → NACK on timeout (or requeue on shutdown)
EscalationWorkerService → RabbitMQ escalation.queue → update alert status
@@ -117,6 +121,7 @@ IHostedServices (background):
| Dashboards | Prometheus 2.52 + Grafana 10.4 |
| Data lake format | Parquet.Net 4.x |
| Docs | Swagger / OpenAPI (Swashbuckle) |
| Validation | FluentValidation.AspNetCore |
| Testing | xUnit + Testcontainers + WebApplicationFactory |
---
@@ -133,6 +138,7 @@ VigilCareClinicalAPI/
│ ├── ObservationsController.cs # Ingest POST, cursor-paginated GET
│ ├── AlertThresholdsController.cs # Threshold CRUD + cache invalidation
│ ├── AlertsController.cs # Alert list (global + per-encounter), acknowledge, resolve
│ ├── OrdersController.cs # Order create, list, get, status transition, record result
│ └── AnalyticsController.cs # Elasticsearch-backed patient search, trend, alert summary, population
├── Domains/
│ ├── Entities/
@@ -149,7 +155,7 @@ VigilCareClinicalAPI/
│ ├── EncounterType.cs # Inpatient, Outpatient, Emergency
│ ├── AlertSeverity.cs # Warning, Critical
│ ├── AlertStatus.cs # Open, Acknowledged, Resolved, Escalated
│ ├── AlertType.cs # Threshold breach, sepsis, systolic BP, AVPU, glucose, …
│ ├── AlertType.cs # Threshold breach, sepsis, warning*, systolic BP, AVPU, glucose, …
│ ├── BloodType.cs # A+, O-, AB-, … with ToDbString/FromDbString
│ ├── ObservationSource.cs # Device, Manual, Lab
│ └── OrderType.cs / ReconciliationCheckType.cs / Department.cs / OrderStatus.cs
@@ -165,8 +171,11 @@ VigilCareClinicalAPI/
│ ├── ObservationService.cs # Ingest transaction: idempotency → plausibility → threshold → alert → outbox; emits Prometheus counters
│ ├── ObservationQueryService.cs # Cursor-paginated history
│ ├── AlertService.cs # Acknowledge, resolve, list
│ ├── OrderService.cs # Order lifecycle; status machine; ConflictException on illegal transitions
│ ├── WarningEvaluator.cs # Warning-range threshold evaluation; idempotent alert INSERT
│ ├── AnalyticsService.cs # Elasticsearch query wrappers
│ └── PlausibilityValidator.cs # Per-code numeric range guard
├── Validators/ # FluentValidation — RegisterPatient, OpenEncounter, IngestObservation, …
├── Observability/
│ └── Metrics/
│ └── ClinicalMetrics.cs # Eight Prometheus metric families (counters, histogram, gauges)
@@ -182,6 +191,7 @@ VigilCareClinicalAPI/
│ │ ├── ElasticIndexProvisioner.cs # Creates patient_encounters, observations, clinical_alerts indices
│ │ └── EsIndexerService.cs # consumer group: es-indexer; upserts Elasticsearch documents
│ ├── SepsisEngineService.cs # consumer group: sepsis-engine; SIRS eval via Redis TTL keys
│ ├── WarningAlertService.cs # consumer group: warning-evaluator; observation.recorded → WARNING alerts
│ ├── Notifications/
│ │ ├── NotificationPublisherService.cs # consumer group: notification-publisher; alert.generated → RabbitMQ paging.queue
│ │ ├── PagingWorkerService.cs # RabbitMQ consumer; logs page; NACK on ack timeout → DLQ, requeue on graceful shutdown
@@ -250,7 +260,10 @@ tests/
├── ReconciliationTests.cs # Three reconciliation checks, deduplication, RabbitMQ publish
├── ObservabilityPhase8Tests.cs # /metrics families and correlation header behavior
├── DataLakePhase9Tests.cs # Kafka → MinIO Parquet flow and schema checks
── ClinicalDemographicsAndObservationTests.cs # Patient/encounter enrichment, expanded observation alerts
── ClinicalDemographicsAndObservationTests.cs # Patient/encounter enrichment, expanded observation alerts
├── WarningAlertTests.cs # WarningEvaluator — warning created, normal/critical skipped, idempotent
├── OrderLifecycleTests.cs # Orders API — create, list, record result, illegal transition 409
└── ValidationTests.cs # FluentValidation — empty fields, threshold ordering, order description
scripts/
├── run-api-redis-tests.sh # Phase 1 — patient/encounter/threshold + Redis cache
@@ -261,10 +274,11 @@ scripts/
├── run-reconciliation-tests.sh # Phase 7 — reconciliation scheduler checks
├── run-phase8-verification.sh # Phase 8 — Prometheus metrics, alerts_unacknowledged_gauge, correlation headers
├── run-phase9-verification.sh # Phase 9 — data lake tests, Kafka offsets, MinIO Parquet, DuckDB schema
── run-phase10-verification.sh # Phase 10 — 12 Redis thresholds, clinical enrichment, ES pipeline, integration tests
── run-phase10-verification.sh # Phase 10 — 12 Redis thresholds, clinical enrichment, ES pipeline, integration tests
└── run-phase11-verification.sh # Phase 11 — warning alerts, orders API, validation, integration tests
docs/
├── plans/ # Phase 110 implementation and verification guides
├── plans/ # Phase 111 implementation and verification guides
├── decisions/
│ ├── data-lake-design.md # Parquet vs JSON, partitioning, replay rationale
│ └── sepsis-engine-design.md # SIRS sliding window and idempotent alert design
@@ -405,6 +419,9 @@ Integration tests use `WebApplicationFactory` with a `Testing` environment and T
| `ObservabilityPhase8Tests` | 8 | All eight `/metrics` families, correlation headers, ingest counter increment |
| `DataLakePhase9Tests` | 9 | Kafka → MinIO Parquet flow and schema checks |
| `ClinicalDemographicsAndObservationTests` | 10 | Patient clinical fields, encounter enrichment, expanded observation codes, critical glucose alert |
| `WarningAlertTests` | 11 | WarningEvaluator — warning HR alert, normal/critical skipped, duplicate idempotent |
| `OrderLifecycleTests` | 11 | Orders API create, list, record result, cancel-resulted 409 |
| `ValidationTests` | 11 | FluentValidation 400 on empty first name, invalid threshold order, empty order description |
### Verification Scripts
@@ -414,6 +431,7 @@ With the API running (`dotnet run`) and Docker Compose up:
./scripts/run-phase8-verification.sh # Prometheus target UP, eight metrics, alerts_unacknowledged_gauge live update
./scripts/run-phase9-verification.sh # DataLakePhase9Tests, Kafka consumer group, MinIO Parquet, DuckDB schema
./scripts/run-phase10-verification.sh # 12 Redis thresholds, clinical enrichment, ES pipeline, Phase 10 integration tests
./scripts/run-phase11-verification.sh # Warning alert pipeline, orders API, FluentValidation, Phase 11 integration tests
```
Per-phase test runners (subset of `dotnet test`):
@@ -656,6 +674,39 @@ open → acknowledged → resolved
| `clinicianId` | string | yes | Clinician identifier |
| `note` | string | no | Optional acknowledgment note |
### Orders
| Method | Path | Description |
|---|---|---|
| POST | `/encounters/{id}/orders` | Create a clinical order for an active encounter |
| GET | `/encounters/{id}/orders` | List orders for an encounter; optional `status`, `page`, `pageSize` |
| GET | `/orders/{id}` | Order detail with encounter |
| PATCH | `/orders/{id}/status` | Transition order status |
| PATCH | `/orders/{id}/result` | Record a result; transitions to `Resulted` |
**Order status machine:**
```
pending → in_progress → resulted
→ cancelled
```
`PATCH /orders/{id}/status` and `PATCH /orders/{id}/result` return **409** on illegal transitions (e.g. cancelling a resulted order).
**POST body:**
| Field | Type | Required | Description |
|---|---|---|---|
| `orderType` | string | yes | `Lab`, `Imaging`, `Medication`, `Procedure` |
| `description` | string | yes | Order description |
| `orderedBy` | string | yes | Ordering clinician |
**PATCH `/orders/{id}/result` body:**
| Field | Type | Required | Description |
|---|---|---|---|
| `resultSummary` | string | no | Free-text result summary |
### Analytics (Elasticsearch)
| Method | Path | Description |
@@ -775,6 +826,7 @@ orderedBy string required (max 200)
status string pending | in_progress | resulted | cancelled (default: pending)
orderedAt DateTimeOffset
resultedAt DateTimeOffset?
resultSummary string? Free-text result summary (set on record result)
```
Indexes: `(encounter_id, ordered_at DESC)`, partial `(status, ordered_at) WHERE status IN ('pending', 'in_progress')`
@@ -879,7 +931,7 @@ Exchange: `clinical.notifications.exchange` (direct)
| Topic | Partition key | Consumer groups |
|---|---|---|
| `observation.recorded` | `encounterId` | `es-indexer`, `sepsis-engine`, `data-lake-writer` |
| `observation.recorded` | `encounterId` | `es-indexer`, `sepsis-engine`, `warning-evaluator`, `data-lake-writer` |
| `alert.generated` | `encounterId` | `es-indexer`, `notification-publisher`, `data-lake-writer` |
| `encounter.status.changed` | `encounterId` | `es-indexer`, `data-lake-writer` |
@@ -979,7 +1031,7 @@ Observation history uses cursor pagination on `(recorded_at DESC, id DESC)`. Off
## Implemented Phases
All ten phases from the project roadmap are implemented and covered by integration tests and/or verification scripts.
Eleven phases from the project roadmap are implemented. Phases 110 and Step 4 of Phase 11 are covered by integration tests (`dotnet test` — 64 passing). Phase 11 Step 5 manual verification (docker compose end-to-end) is documented in `docs/plans/phase-11-plan.md`.
| Phase | Feature | Status |
|---|---|---|
@@ -993,5 +1045,6 @@ All ten phases from the project roadmap are implemented and covered by integrati
| 8 | Prometheus metrics (`GET /metrics`); eight metric families and three collectors; Grafana clinical dashboard; `ObservabilityPhase8Tests`; `run-phase8-verification.sh` | Done |
| 9 | Data lake writer — `data-lake-writer` consumer group; date-partitioned Parquet flush to MinIO; `DataLakePhase9Tests`; `run-phase9-verification.sh`; design doc in `docs/decisions/data-lake-design.md` | Done |
| 10 | Clinical data model expansion — `BloodType`, patient allergies/emergency contact, encounter room/bed/admission/discharge fields; five new observation codes (`SYSTOLIC_BP`, `DIASTOLIC_BP`, `LACTATE_MMOL_L`, `AVPU`, `SUPPLEMENTAL_O2`); `GLUCOSE_MG_DL` threshold fix; 12 seeded thresholds; `ClinicalDemographicsAndObservationTests`; `run-phase10-verification.sh` | Done |
| 11 | Warning alert consumer (`WarningAlertService` / `warning-evaluator`); 10 `Warning*` alert types; Orders API (`OrdersController`, `OrderService`); FluentValidation on all request DTOs; `WarningAlertTests`, `OrderLifecycleTests`, `ValidationTests`; `run-phase11-verification.sh` | Done (Step 5 E2E verification via script) |
**Optional follow-up:** execute and document the Kafka replay demonstration for the data lake (reset `data-lake-writer` offsets, clear MinIO prefixes, restart API, confirm Parquet rebuild). See `docs/plans/phase-9-plan.md` § Replay demonstration.
+334
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@@ -0,0 +1,334 @@
#!/usr/bin/env bash
set -euo pipefail
SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
ROOT_DIR="$(cd "${SCRIPT_DIR}/.." && pwd)"
COMPOSE_FILE="${COMPOSE_FILE:-${ROOT_DIR}/docker-compose.yml}"
BASE_URL="${BASE_URL:-http://localhost:5270}"
ES_URL="${ES_URL:-http://localhost:9200}"
RABBITMQ_MGMT_URL="${RABBITMQ_MGMT_URL:-http://localhost:15674}"
RABBITMQ_USER="${RABBITMQ_USER:-guest}"
RABBITMQ_PASS="${RABBITMQ_PASS:-guest}"
REDIS_PORT="${REDIS_PORT:-6382}"
PGHOST="${PGHOST:-localhost}"
PGPORT="${PGPORT:-5436}"
PGDATABASE="${PGDATABASE:-vigilcare}"
PGUSER="${PGUSER:-postgres}"
PGPASSWORD="${PGPASSWORD:-password}"
TEST_PROJECT="${TEST_PROJECT:-${ROOT_DIR}/VigilCareClinicalAPI.Tests/VigilCareClinicalAPI.Tests.csproj}"
TEST_FILTER="${TEST_FILTER:-FullyQualifiedName~WarningAlertTests|FullyQualifiedName~OrderLifecycleTests|FullyQualifiedName~ValidationTests}"
FULL_TEST="${FULL_TEST:-0}"
WARNING_WAIT_SECS="${WARNING_WAIT_SECS:-45}"
INDEX_WAIT_SECS="${INDEX_WAIT_SECS:-60}"
WARNING_CONSUMER_GROUP="${WARNING_CONSUMER_GROUP:-warning-evaluator}"
ES_CONSUMER_GROUP="${ES_CONSUMER_GROUP:-es-indexer}"
SCRIPT_RUN_ID="$(date -u +"%Y%m%d%H%M%S")"
RECORDED_AT="$(date -u +"%Y-%m-%dT%H:%M:%SZ")"
TMP_FILES=()
cleanup() {
local f
for f in "${TMP_FILES[@]}"; do
rm -f "${f}" "${f}.status" 2>/dev/null || true
done
}
trap cleanup EXIT
need() {
command -v "$1" >/dev/null 2>&1 || {
echo "Missing dependency: $1"
exit 1
}
}
need curl
need jq
need dotnet
if ! command -v docker >/dev/null 2>&1 || [[ ! -f "${COMPOSE_FILE}" ]]; then
echo "Missing dependency: docker compose (${COMPOSE_FILE})"
exit 1
fi
compose() {
docker compose -f "${COMPOSE_FILE}" "$@"
}
kafka_exec() {
compose exec -T kafka "$@"
}
redis_cmd() {
if command -v redis-cli >/dev/null 2>&1; then
redis-cli -p "${REDIS_PORT}" "$@"
else
compose exec -T redis redis-cli "$@"
fi
}
psql_cmd() {
local sql="$1"
if command -v psql >/dev/null 2>&1; then
PGPASSWORD="${PGPASSWORD}" psql -h "${PGHOST}" -p "${PGPORT}" -U "${PGUSER}" -d "${PGDATABASE}" -tAc "${sql}"
else
compose exec -T postgres psql -U "${PGUSER}" -d "${PGDATABASE}" -tAc "${sql}"
fi
}
request() {
local method="$1"
local url="$2"
local body="${3:-}"
local tmp
tmp="$(mktemp)"
TMP_FILES+=("${tmp}")
local status
if [[ -n "${body}" ]]; then
status="$(curl -sS -o "${tmp}" -w "%{http_code}" -X "${method}" "${url}" \
-H "Content-Type: application/json" -d "${body}")"
else
status="$(curl -sS -o "${tmp}" -w "%{http_code}" -X "${method}" "${url}")"
fi
echo "${status}" > "${tmp}.status"
echo "${tmp}"
}
assert_status() {
local expected="$1"
local body_file="$2"
local status
status="$(<"${body_file}.status")"
if [[ "${status}" != "${expected}" ]]; then
echo "Expected HTTP ${expected}, got ${status}"
cat "${body_file}"
echo
exit 1
fi
}
rabbit_api() {
curl -sS -u "${RABBITMQ_USER}:${RABBITMQ_PASS}" "${RABBITMQ_MGMT_URL}/api/${1}"
}
queue_stat() {
local queue="$1"
local field="$2"
rabbit_api "queues/%2F/${queue}" | jq -r "${field} // 0"
}
consumer_group_lag() {
local group="$1"
kafka_exec /opt/kafka/bin/kafka-consumer-groups.sh \
--bootstrap-server localhost:9092 \
--describe \
--group "${group}" 2>/dev/null | \
awk 'NR > 1 && $1 != "" { sum += $6 } END { print sum + 0 }'
}
wait_for_consumer_lag_zero() {
local group="$1"
local max_secs="$2"
local elapsed=0
local lag="unknown"
while (( elapsed < max_secs )); do
lag="$(consumer_group_lag "${group}")"
if [[ "${lag}" == "0" ]]; then
return 0
fi
sleep 2
elapsed=$((elapsed + 2))
done
echo "Consumer group ${group} lag did not reach zero within ${max_secs}s (lag=${lag})"
exit 1
}
es_alert_hits() {
local alert_type="$1"
local encounter_id="$2"
local payload
payload="$(jq -nc \
--arg type "${alert_type}" \
--arg enc "${encounter_id}" \
'{query:{bool:{must:[{term:{alertType:$type}},{term:{encounterId:$enc}}]}},size:0,track_total_hits:true}')"
local body
body="$(curl -sS "${ES_URL}/clinical_alerts/_search" \
-H "Content-Type: application/json" \
-d "${payload}")"
jq -r '.hits.total.value // .hits.total // 0' <<< "${body}"
}
echo "Phase 11 verification starting..."
echo "Repo root: ${ROOT_DIR}"
echo "API: ${BASE_URL}"
echo "[1/10] Preflight API, Elasticsearch, PostgreSQL, Redis, RabbitMQ, Kafka"
api_status="$(curl -sS -o /dev/null -w "%{http_code}" "${BASE_URL}/api/v1/alert-thresholds" || true)"
es_status="$(curl -sS -o /dev/null -w "%{http_code}" "${ES_URL}/_cluster/health" || true)"
rabbit_status="$(curl -sS -o /dev/null -w "%{http_code}" -u "${RABBITMQ_USER}:${RABBITMQ_PASS}" "${RABBITMQ_MGMT_URL}/api/overview" || true)"
[[ "${api_status}" == "200" ]] || { echo "API not ready (${api_status}) — run docker compose up -d and dotnet run"; exit 1; }
[[ "${es_status}" == "200" ]] || { echo "Elasticsearch not ready (${es_status})"; exit 1; }
[[ "${rabbit_status}" == "200" ]] || { echo "RabbitMQ management API not ready (${rabbit_status})"; exit 1; }
redis_cmd PING >/dev/null || { echo "Redis not reachable on port ${REDIS_PORT}"; exit 1; }
psql_cmd "SELECT 1" >/dev/null || { echo "PostgreSQL not reachable"; exit 1; }
kafka_exec /opt/kafka/bin/kafka-broker-api-versions.sh --bootstrap-server localhost:9092 >/dev/null || {
echo "Kafka not ready"
exit 1
}
redis_cmd EXISTS "threshold:HEART_RATE" | grep -q '^1$' || {
echo "Missing Redis threshold:HEART_RATE — restart API to run ThresholdCacheLoader"
exit 1
}
echo "OK: infrastructure preflight passed"
echo "[2/10] Create patient and active encounter"
patient_payload="$(jq -nc \
--arg fn "Phase11" \
--arg ln "Verify${SCRIPT_RUN_ID}" \
'{firstName:$fn,lastName:$ln,dateOfBirth:"1985-06-01",gender:"M"}')"
patient_resp="$(request POST "${BASE_URL}/api/v1/patients" "${patient_payload}")"
assert_status "201" "${patient_resp}"
patient_id="$(jq -r '.data.id' "${patient_resp}")"
enc_payload='{"encounterType":"Inpatient","department":"ICU","attendingPhysician":"Dr. Phase11"}'
enc_resp="$(request POST "${BASE_URL}/api/v1/patients/${patient_id}/encounters" "${enc_payload}")"
assert_status "201" "${enc_resp}"
encounter_id="$(jq -r '.data.id' "${enc_resp}")"
echo "OK: patient=${patient_id} encounter=${encounter_id}"
echo "[3/10] Warning-range heart rate — synchronous ingest must not create critical alert"
paging_publish_before="$(queue_stat "alerts.paging.queue" '.message_stats.publish')"
hr_payload="$(jq -nc \
--arg recordedAt "${RECORDED_AT}" \
--arg key "phase11-warning-hr-${encounter_id}" \
'{observations:[{observationCode:"HEART_RATE",value:105,unit:"bpm",source:"DEVICE",recordedAt:$recordedAt,idempotencyKey:$key}]}')"
hr_resp="$(request POST "${BASE_URL}/api/v1/encounters/${encounter_id}/observations" "${hr_payload}")"
assert_status "201" "${hr_resp}"
[[ "$(jq -r '.data.alertGenerated' "${hr_resp}")" == "false" ]] || {
echo "Expected alertGenerated=false for warning-range heart rate 105"
cat "${hr_resp}"
exit 1
}
echo "OK: ingest returned alertGenerated=false"
echo "[4/10] Wait for warning-evaluator and verify WARNING_HEART_RATE in PostgreSQL"
wait_for_consumer_lag_zero "${WARNING_CONSUMER_GROUP}" "${WARNING_WAIT_SECS}"
warning_count="$(psql_cmd "SELECT COUNT(*) FROM clinical_alerts WHERE encounter_id = '${encounter_id}' AND severity = 'WARNING' AND alert_type = 'WARNING_HEART_RATE' AND status = 'OPEN'")"
[[ "${warning_count}" == "1" ]] || {
echo "Expected 1 WARNING_HEART_RATE alert in PostgreSQL, found ${warning_count}"
psql_cmd "SELECT alert_type, severity, status FROM clinical_alerts WHERE encounter_id = '${encounter_id}'" || true
exit 1
}
echo "OK: WARNING_HEART_RATE alert exists in PostgreSQL"
echo "[5/10] Verify warning alert indexed in Elasticsearch"
wait_for_consumer_lag_zero "${ES_CONSUMER_GROUP}" "${INDEX_WAIT_SECS}"
es_hits="$(es_alert_hits "WARNING_HEART_RATE" "${encounter_id}")"
[[ "${es_hits}" -ge 1 ]] || {
echo "Expected Elasticsearch hit for WARNING_HEART_RATE on encounter ${encounter_id}, found ${es_hits}"
exit 1
}
echo "OK: clinical_alerts index contains WARNING_HEART_RATE"
echo "[6/10] Verify warning alert was not published to alerts.paging.queue"
paging_publish_after="$(queue_stat "alerts.paging.queue" '.message_stats.publish')"
[[ "${paging_publish_after}" == "${paging_publish_before}" ]] || {
echo "Expected no new paging publishes for WARNING alert (before=${paging_publish_before}, after=${paging_publish_after})"
exit 1
}
echo "OK: alerts.paging.queue publish count unchanged"
echo "[7/10] Orders API — create, list, record result, illegal cancel"
order_payload='{"orderType":"Lab","description":"CBC with differential","orderedBy":"Dr. Phase11"}'
order_resp="$(request POST "${BASE_URL}/api/v1/encounters/${encounter_id}/orders" "${order_payload}")"
assert_status "201" "${order_resp}"
order_id="$(jq -r '.data.id' "${order_resp}")"
[[ "$(jq -r '.data.status' "${order_resp}")" == "Pending" ]] || {
echo "Expected order status Pending"
cat "${order_resp}"
exit 1
}
list_resp="$(request GET "${BASE_URL}/api/v1/encounters/${encounter_id}/orders")"
assert_status "200" "${list_resp}"
[[ "$(jq -r '.data.totalCount' "${list_resp}")" -ge 1 ]] || {
echo "Expected totalCount >= 1 on order list"
cat "${list_resp}"
exit 1
}
result_payload='{"resultSummary":"WBC 8.5, Hgb 14.2, Plt 210 — all within normal limits"}'
result_resp="$(request PATCH "${BASE_URL}/api/v1/orders/${order_id}/result" "${result_payload}")"
assert_status "200" "${result_resp}"
[[ "$(jq -r '.data.status' "${result_resp}")" == "Resulted" ]] || {
echo "Expected order status Resulted after recording result"
cat "${result_resp}"
exit 1
}
[[ "$(jq -r '.data.resultSummary' "${result_resp}")" == *"8.5"* ]] || {
echo "Expected resultSummary to contain lab values"
cat "${result_resp}"
exit 1
}
cancel_payload='{"status":"Cancelled"}'
cancel_resp="$(request PATCH "${BASE_URL}/api/v1/orders/${order_id}/status" "${cancel_payload}")"
assert_status "409" "${cancel_resp}"
[[ "$(jq -r '.error.code' "${cancel_resp}")" == "ILLEGAL_ORDER_STATUS_TRANSITION" ]] || {
echo "Expected ILLEGAL_ORDER_STATUS_TRANSITION on cancel of resulted order"
cat "${cancel_resp}"
exit 1
}
echo "OK: order lifecycle and illegal transition guard verified"
echo "[8/10] Input validation — FluentValidation 400 responses"
invalid_patient="$(jq -nc '{firstName:"",lastName:"Test",dateOfBirth:"1990-01-01",gender:"M"}')"
val_patient_resp="$(request POST "${BASE_URL}/api/v1/patients" "${invalid_patient}")"
assert_status "400" "${val_patient_resp}"
[[ "$(jq -r '.error.code' "${val_patient_resp}")" == "VALIDATION_ERROR" ]] || {
echo "Expected VALIDATION_ERROR for empty firstName"
cat "${val_patient_resp}"
exit 1
}
invalid_threshold='{"observationCode":"TEST_CODE","displayName":"Test","unit":"units","criticalLow":50,"warningLow":30}'
val_threshold_resp="$(request POST "${BASE_URL}/api/v1/alert-thresholds" "${invalid_threshold}")"
assert_status "400" "${val_threshold_resp}"
threshold_details="$(jq -c '.error.details // []' "${val_threshold_resp}")"
echo "${threshold_details}" | grep -qi "CriticalLow must be less than WarningLow" || {
echo "Expected threshold ordering validation message"
cat "${val_threshold_resp}"
exit 1
}
invalid_order='{"orderType":"Lab","description":"","orderedBy":"Dr. Test"}'
val_order_resp="$(request POST "${BASE_URL}/api/v1/encounters/${encounter_id}/orders" "${invalid_order}")"
assert_status "400" "${val_order_resp}"
[[ "$(jq -r '.error.code' "${val_order_resp}")" == "VALIDATION_ERROR" ]] || {
echo "Expected VALIDATION_ERROR for empty order description"
cat "${val_order_resp}"
exit 1
}
echo "OK: validation rejects empty firstName, invalid threshold order, empty order description"
echo "[9/10] Run Phase 11 integration tests"
dotnet test "${TEST_PROJECT}" --filter "${TEST_FILTER}"
if [[ "${FULL_TEST}" == "1" ]]; then
echo "[10/10] Run full test suite (FULL_TEST=1)"
dotnet test "${ROOT_DIR}/VigilCareClinicalAPI.sln" 2>/dev/null || dotnet test "${ROOT_DIR}"
else
echo "[10/10] Skipping full suite (set FULL_TEST=1 to run all 64 tests)"
fi
echo
echo "Phase 11 verification checks passed."