chore: necessary updates given the changes in the alert controller

This commit is contained in:
voltsrage
2026-06-25 00:40:47 +08:00
parent 666d683d67
commit 7bb9124230
32 changed files with 353 additions and 40 deletions
@@ -4,4 +4,5 @@ public record SyncedAlertEvent(
string AlertType, string AlertType,
string Severity, string Severity,
string Details, string Details,
DateTimeOffset GeneratedAt); DateTimeOffset GeneratedAt,
string? ExplanationJson = null);
@@ -0,0 +1,32 @@
public class AlertExplanation
{
public List<ScoreContributor> ScoreContributors { get; set; } = new();
public TrendContext? Trend { get; set; }
public MedicationContext? MedicationContext { get; set; }
public string NarrativeSummary { get; set; } = string.Empty;
}
public class ScoreContributor
{
public string Parameter { get; set; } = string.Empty;
public int Points { get; set; }
public string? RawValue { get; set; }
public string? NormalRange { get; set; }
}
public class TrendContext
{
public string Parameter { get; set; } = string.Empty;
public double PercentChange { get; set; }
public TimeSpan Duration { get; set; }
public string Direction { get; set; } = string.Empty;
}
public class MedicationContext
{
public string DrugName { get; set; } = string.Empty;
public string Dose { get; set; } = string.Empty;
public string Route { get; set; } = string.Empty;
public DateTimeOffset AdministeredAt { get; set; }
public string? RelevanceNote { get; set; }
}
@@ -1,3 +1,19 @@
public record AlertResponse( public record AlertResponse(
Guid Id, string AlertType, string Severity, string Status, Guid Id,
string Details, DateTimeOffset TriggeredAt); Guid EncounterId,
Guid PatientId,
string AlertType,
string Severity,
string Details,
string Status,
DateTimeOffset TriggeredAt,
DateTimeOffset? AcknowledgedAt = null,
string? AcknowledgedBy = null,
DateTimeOffset? ResolvedAt = null,
AlertExplanation? Explanation = null)
{
public string DisplaySummary =>
string.IsNullOrWhiteSpace(Explanation?.NarrativeSummary)
? Details
: Explanation!.NarrativeSummary;
}
@@ -1,8 +1,11 @@
using System.Net.Http.Headers; using System.Net.Http.Headers;
using System.Net.Http.Json; using System.Net.Http.Json;
using System.Text.Json;
public class VigilCareApiClient public class VigilCareApiClient
{ {
private static readonly JsonSerializerOptions ApiJsonOptions = new(JsonSerializerDefaults.Web);
private readonly HttpClient _http; private readonly HttpClient _http;
public VigilCareApiClient(HttpClient http) public VigilCareApiClient(HttpClient http)
@@ -147,7 +150,7 @@ public class VigilCareApiClient
var response = await _http.GetAsync($"/api/v1/encounters/{encounterId}/alerts"); var response = await _http.GetAsync($"/api/v1/encounters/{encounterId}/alerts");
if (!response.IsSuccessStatusCode) return new(); if (!response.IsSuccessStatusCode) return new();
var envelope = await response.Content var envelope = await response.Content
.ReadFromJsonAsync<ApiResponse<PagedResponse<AlertResponse>>>(); .ReadFromJsonAsync<ApiResponse<PagedResponse<AlertResponse>>>(ApiJsonOptions);
return envelope?.Data?.Items?.ToList() ?? new(); return envelope?.Data?.Items?.ToList() ?? new();
} }
@@ -126,6 +126,19 @@ public class ReplayEngine
// --- Phase 3: Summary --- // --- Phase 3: Summary ---
result.Duration = DateTimeOffset.UtcNow - startTime; result.Duration = DateTimeOffset.UtcNow - startTime;
if (!options.DryRun
&& options.Target == ReplayTarget.Central
&& scenario.ExpectedOutcomes is { Count: > 0 })
{
var failures = await ExpectedOutcomeValidator.ValidateAsync(
_client, result.EncounterId, scenario, ct);
result.HadExpectedOutcomes = true;
result.OutcomeFailures.AddRange(failures);
foreach (var failure in failures)
SimulatorConsole.Error(failure);
}
SimulatorConsole.Summary(result); SimulatorConsole.Summary(result);
return result; return result;
} }
@@ -9,6 +9,10 @@ public class ReplayResult
public int OrdersPlaced { get; set; } public int OrdersPlaced { get; set; }
public int OrdersResulted { get; set; } public int OrdersResulted { get; set; }
public TimeSpan Duration { get; set; } public TimeSpan Duration { get; set; }
public List<string> OutcomeFailures { get; } = new();
public bool HadExpectedOutcomes { get; set; }
public bool OutcomesPassed => OutcomeFailures.Count == 0;
public ReplayResult(string scenarioId) => ScenarioId = scenarioId; public ReplayResult(string scenarioId) => ScenarioId = scenarioId;
} }
+13 -2
View File
@@ -47,6 +47,13 @@ public static class SimulatorConsole
table.AddRow("Orders placed", r.OrdersPlaced.ToString()); table.AddRow("Orders placed", r.OrdersPlaced.ToString());
table.AddRow("Orders resulted", r.OrdersResulted.ToString()); table.AddRow("Orders resulted", r.OrdersResulted.ToString());
table.AddRow("Wall-clock time", $"{r.Duration.TotalSeconds:F1}s"); table.AddRow("Wall-clock time", $"{r.Duration.TotalSeconds:F1}s");
if (r.HadExpectedOutcomes)
{
table.AddRow("Expected outcomes",
r.OutcomeFailures.Count > 0
? $"[red]{r.OutcomeFailures.Count} failed[/]"
: "[green]passed[/]");
}
AnsiConsole.Write(table); AnsiConsole.Write(table);
} }
@@ -88,8 +95,12 @@ public static class SimulatorConsole
$"[cyan][[{simTime}]][/] qSOFA screen = {poll.Qsofa.ActiveCriteria}/3"); $"[cyan][[{simTime}]][/] qSOFA screen = {poll.Qsofa.ActiveCriteria}/3");
foreach (var alert in poll.NewAlerts) foreach (var alert in poll.NewAlerts)
AnsiConsole.MarkupLine( {
$"[red][[{simTime}]][/] ALERT {alert.AlertType} ({alert.Severity})"); var line = $"[red][[{simTime}]][/] ALERT {alert.AlertType} ({alert.Severity})";
if (!string.IsNullOrWhiteSpace(alert.Explanation?.NarrativeSummary))
line += $" — {Markup.Escape(alert.Explanation.NarrativeSummary)}";
AnsiConsole.MarkupLine(line);
}
if (poll.SepsisBundle is not null) if (poll.SepsisBundle is not null)
AnsiConsole.MarkupLine( AnsiConsole.MarkupLine(
@@ -0,0 +1,150 @@
public static class ExpectedOutcomeValidator
{
private static readonly TimeSpan AsyncSettleDelay = TimeSpan.FromSeconds(8);
public static async Task<List<string>> ValidateAsync(
VigilCareApiClient client,
Guid encounterId,
ScenarioFile scenario,
CancellationToken ct = default)
{
if (scenario.ExpectedOutcomes is not { Count: > 0 })
return [];
await Task.Delay(AsyncSettleDelay, ct);
var failures = new List<string>();
var alerts = await client.GetAlertsAsync(encounterId);
foreach (var outcome in scenario.ExpectedOutcomes)
{
switch (outcome.Type)
{
case "alert":
failures.AddRange(ValidateAlertOutcome(outcome, alerts, scenario.Scenario.Id));
break;
case "score":
failures.AddRange(await ValidateScoreOutcomeAsync(client, encounterId, outcome, scenario.Scenario.Id, ct));
break;
case "bundle":
failures.AddRange(await ValidateBundleOutcomeAsync(client, encounterId, outcome, scenario.Scenario.Id, ct));
break;
default:
failures.Add($"[{scenario.Scenario.Id}] Unknown expected outcome type '{outcome.Type}'");
break;
}
}
return failures;
}
private static IEnumerable<string> ValidateAlertOutcome(
ExpectedOutcome outcome, List<AlertResponse> alerts, string scenarioId)
{
if (string.IsNullOrWhiteSpace(outcome.AlertType))
{
yield return $"[{scenarioId}] Alert outcome at T+{outcome.AfterOffsetMinutes}m missing alertType";
yield break;
}
var matching = alerts
.Where(a => string.Equals(a.AlertType, outcome.AlertType, StringComparison.OrdinalIgnoreCase))
.ToList();
if (matching.Count == 0)
{
yield return
$"[{scenarioId}] Expected alert {outcome.AlertType} at T+{outcome.AfterOffsetMinutes}m — not found " +
$"(description: {outcome.Description ?? "n/a"})";
yield break;
}
if (!string.IsNullOrWhiteSpace(outcome.NarrativeContains))
{
var withNarrative = matching.FirstOrDefault(a =>
a.Explanation?.NarrativeSummary?.Contains(
outcome.NarrativeContains, StringComparison.OrdinalIgnoreCase) == true);
if (withNarrative is null)
{
var summaries = matching
.Select(a => a.Explanation?.NarrativeSummary ?? a.Details)
.Take(2);
yield return
$"[{scenarioId}] Alert {outcome.AlertType} at T+{outcome.AfterOffsetMinutes}m — " +
$"narrative does not contain '{outcome.NarrativeContains}' " +
$"(got: {string.Join(" | ", summaries)})";
}
}
}
private static async Task<IEnumerable<string>> ValidateScoreOutcomeAsync(
VigilCareApiClient client,
Guid encounterId,
ExpectedOutcome outcome,
string scenarioId,
CancellationToken ct)
{
if (string.IsNullOrWhiteSpace(outcome.ScoreType))
return [$"[{scenarioId}] Score outcome at T+{outcome.AfterOffsetMinutes}m missing scoreType"];
if (!outcome.ExpectedMinimum.HasValue)
return [$"[{scenarioId}] Score outcome at T+{outcome.AfterOffsetMinutes}m missing expectedMinimum"];
var actual = await GetScoreAsync(client, encounterId, outcome.ScoreType, ct);
if (actual is null)
{
return
[
$"[{scenarioId}] Expected {outcome.ScoreType} {outcome.ExpectedMinimum} at T+{outcome.AfterOffsetMinutes}m score not available"
];
}
if (actual.Value < outcome.ExpectedMinimum.Value)
{
return
[
$"[{scenarioId}] Expected {outcome.ScoreType} {outcome.ExpectedMinimum} at T+{outcome.AfterOffsetMinutes}m got {actual.Value} " +
$"(description: {outcome.Description ?? "n/a"})"
];
}
return [];
}
private static async Task<IEnumerable<string>> ValidateBundleOutcomeAsync(
VigilCareApiClient client,
Guid encounterId,
ExpectedOutcome outcome,
string scenarioId,
CancellationToken ct)
{
var bundle = await client.GetSepsisBundleAsync(encounterId);
if (bundle is null)
{
return
[
$"[{scenarioId}] Expected sepsis bundle at T+{outcome.AfterOffsetMinutes}m bundle not found " +
$"(description: {outcome.Description ?? "n/a"})"
];
}
return [];
}
private static async Task<int?> GetScoreAsync(
VigilCareApiClient client,
Guid encounterId,
string scoreType,
CancellationToken ct)
{
return scoreType.ToUpperInvariant() switch
{
"NEWS2" => (await client.GetCurrentNews2Async(encounterId))?.TotalScore,
"GCS" => (await client.GetCurrentGcsAsync(encounterId))?.TotalScore,
"SOFA" => (await client.GetCurrentSofaAsync(encounterId))?.TotalScore,
"QSOFA" => (await client.GetCurrentQsofaAsync(encounterId))?.ActiveCriteria,
_ => null
};
}
}
@@ -1269,13 +1269,15 @@
"afterOffsetMinutes": 105, "afterOffsetMinutes": 105,
"type": "alert", "type": "alert",
"alertType": "NEWS2_EMERGENCY", "alertType": "NEWS2_EMERGENCY",
"description": "NEWS2 total of 8 (>=7) triggers EMERGENCY alert \u2014 rapid hemodynamic compromise" "narrativeContains": "NEWS2",
"description": "NEWS2 total of 8 (>=7) triggers EMERGENCY alert — rapid hemodynamic compromise"
}, },
{ {
"afterOffsetMinutes": 105, "afterOffsetMinutes": 105,
"type": "alert", "type": "alert",
"alertType": "RAPID_DETERIORATION", "alertType": "RAPID_DETERIORATION",
"description": "HR rose from 88 to 121 (+33 bpm) and SBP fell from 132 to 100 (-32 mmHg) within 75 minutes, SpO2 dropped from 97 to 93 \u2014 consistent with rapid deterioration detection" "narrativeContains": "deterioration",
"description": "HR rose from 88 to 121 (+33 bpm) and SBP fell from 132 to 100 (-32 mmHg) within 75 minutes, SpO2 dropped from 97 to 93 — consistent with rapid deterioration detection"
}, },
{ {
"afterOffsetMinutes": 130, "afterOffsetMinutes": 130,
@@ -156,12 +156,14 @@
"afterOffsetMinutes": 60, "afterOffsetMinutes": 60,
"type": "alert", "type": "alert",
"alertType": "GCS_WARNING", "alertType": "GCS_WARNING",
"narrativeContains": "GCS",
"description": "GCS 12 in 912 band" "description": "GCS 12 in 912 band"
}, },
{ {
"afterOffsetMinutes": 150, "afterOffsetMinutes": 150,
"type": "alert", "type": "alert",
"alertType": "GCS_CRITICAL", "alertType": "GCS_CRITICAL",
"narrativeContains": "GCS",
"description": "GCS 6 ≤ 8" "description": "GCS 6 ≤ 8"
} }
] ]
@@ -252,6 +252,7 @@
"afterOffsetMinutes": 130, "afterOffsetMinutes": 130,
"type": "alert", "type": "alert",
"alertType": "SOFA_SEPSIS", "alertType": "SOFA_SEPSIS",
"narrativeContains": "SOFA",
"description": "SOFA delta ≥ 2 from baseline after labs + vasopressor" "description": "SOFA delta ≥ 2 from baseline after labs + vasopressor"
}, },
{ {
@@ -25,4 +25,5 @@ public record ScenarioEvent(
public record ExpectedOutcome( public record ExpectedOutcome(
double AfterOffsetMinutes, string Type, double AfterOffsetMinutes, string Type,
string? AlertType, string? ScoreType, string? AlertType, string? ScoreType,
double? ExpectedMinimum, string? Description); double? ExpectedMinimum, string? Description,
string? NarrativeContains = null);
+2 -1
View File
@@ -60,7 +60,8 @@
"alertType": { "type": "string" }, "alertType": { "type": "string" },
"scoreType": { "type": "string" }, "scoreType": { "type": "string" },
"expectedMinimum": { "type": "number" }, "expectedMinimum": { "type": "number" },
"description": { "type": "string" } "description": { "type": "string" },
"narrativeContains": { "type": "string", "description": "Substring expected in explanation.narrativeSummary for explainable scoring alerts" }
} }
} }
}, },
@@ -170,7 +170,8 @@ public sealed class SyncUploaderService : BackgroundService
p.AlertType, p.AlertType,
p.Severity, p.Severity,
p.Details, p.Details,
p.GeneratedAt); p.GeneratedAt,
p.ExplanationJson);
} }
private static SyncedAlertAcknowledgment MapAck(BufferedSyncItem item) private static SyncedAlertAcknowledgment MapAck(BufferedSyncItem item)
@@ -215,7 +216,8 @@ public sealed class SyncUploaderService : BackgroundService
string AlertType, string AlertType,
string Severity, string Severity,
string Details, string Details,
DateTimeOffset GeneratedAt); DateTimeOffset GeneratedAt,
string? ExplanationJson = null);
private sealed record BufferedAckPayload( private sealed record BufferedAckPayload(
Guid ClientRef, Guid ClientRef,
@@ -65,6 +65,9 @@ public class LocalClinicalAlertConfiguration : IEntityTypeConfiguration<LocalCli
builder.Property(a => a.ResolvedAt).HasColumnName("resolved_at"); builder.Property(a => a.ResolvedAt).HasColumnName("resolved_at");
builder.Property(a => a.ClientAlertId).HasColumnName("client_alert_id").IsRequired(); builder.Property(a => a.ClientAlertId).HasColumnName("client_alert_id").IsRequired();
builder.Property(a => a.TriggeredAt).HasColumnName("triggered_at").HasDefaultValueSql("NOW()"); builder.Property(a => a.TriggeredAt).HasColumnName("triggered_at").HasDefaultValueSql("NOW()");
builder.Property(a => a.ExplanationJson)
.HasColumnName("explanation")
.HasColumnType("jsonb");
builder.HasOne(a => a.Encounter) builder.HasOne(a => a.Encounter)
.WithMany(e => e.Alerts) .WithMany(e => e.Alerts)
@@ -14,6 +14,7 @@ public class LocalClinicalAlert
public DateTimeOffset? ResolvedAt { get; set; } public DateTimeOffset? ResolvedAt { get; set; }
public DateTimeOffset TriggeredAt { get; set; } public DateTimeOffset TriggeredAt { get; set; }
public Guid ClientAlertId { get; set; } public Guid ClientAlertId { get; set; }
public string? ExplanationJson { get; set; }
public ReplicaEncounter Encounter { get; set; } = null!; public ReplicaEncounter Encounter { get; set; } = null!;
} }
@@ -0,0 +1,24 @@
using Microsoft.EntityFrameworkCore.Migrations;
#nullable disable
namespace VigilCare.WardGateway.Migrations;
public partial class AddLocalAlertExplanation : Migration
{
protected override void Up(MigrationBuilder migrationBuilder)
{
migrationBuilder.AddColumn<string>(
name: "explanation",
table: "clinical_alerts",
type: "jsonb",
nullable: true);
}
protected override void Down(MigrationBuilder migrationBuilder)
{
migrationBuilder.DropColumn(
name: "explanation",
table: "clinical_alerts");
}
}
@@ -140,6 +140,10 @@ namespace VigilCare.WardGateway.Migrations
.HasColumnType("text") .HasColumnType("text")
.HasColumnName("details"); .HasColumnName("details");
b.Property<string>("ExplanationJson")
.HasColumnType("jsonb")
.HasColumnName("explanation");
b.Property<Guid>("EncounterId") b.Property<Guid>("EncounterId")
.HasColumnType("uuid") .HasColumnType("uuid")
.HasColumnName("encounter_id"); .HasColumnName("encounter_id");
@@ -227,6 +227,13 @@ public class EsIndexerService : BackgroundService
AlertType = evt.AlertType, AlertType = evt.AlertType,
Severity = evt.Severity, Severity = evt.Severity,
Status = "Open", Status = "Open",
Details = root.TryGetProperty("details", out var detailsElem)
? detailsElem.GetString() ?? string.Empty
: string.Empty,
NarrativeSummary = root.TryGetProperty("explanation", out var explanationElem)
&& explanationElem.TryGetProperty("narrativeSummary", out var narrativeElem)
? narrativeElem.GetString()
: null,
TriggeredAt = evt.TriggeredAt TriggeredAt = evt.TriggeredAt
}; };
@@ -135,13 +135,13 @@ public class AlertsController : ControllerBase
/// <returns>The updated alert.</returns> /// <returns>The updated alert.</returns>
[HttpPost("api/v1/alerts/{id:guid}/acknowledge")] [HttpPost("api/v1/alerts/{id:guid}/acknowledge")]
[AuthorizePermission(ClinicalPermissions.AlertsAcknowledge)] [AuthorizePermission(ClinicalPermissions.AlertsAcknowledge)]
[ProducesResponseType(typeof(ApiResponse<ClinicalAlert>), StatusCodes.Status200OK)] [ProducesResponseType(typeof(ApiResponse<AlertResponse>), StatusCodes.Status200OK)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status404NotFound)] [ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status404NotFound)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status409Conflict)] [ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status409Conflict)]
public async Task<IActionResult> Acknowledge(Guid id, [FromBody] AcknowledgeAlertRequest req) public async Task<IActionResult> Acknowledge(Guid id, [FromBody] AcknowledgeAlertRequest req)
{ {
var alert = await _alerts.AcknowledgeAsync(id, req); var alert = await _alerts.AcknowledgeAsync(id, req);
return Ok(ApiResponse<ClinicalAlert>.Ok(alert)); return Ok(ApiResponse<AlertResponse>.Ok(alert));
} }
/// <summary> /// <summary>
@@ -151,13 +151,13 @@ public class AlertsController : ControllerBase
/// <returns>The updated alert.</returns> /// <returns>The updated alert.</returns>
[HttpPost("api/v1/alerts/{id:guid}/resolve")] [HttpPost("api/v1/alerts/{id:guid}/resolve")]
[AuthorizePermission(ClinicalPermissions.AlertsResolve)] [AuthorizePermission(ClinicalPermissions.AlertsResolve)]
[ProducesResponseType(typeof(ApiResponse<ClinicalAlert>), StatusCodes.Status200OK)] [ProducesResponseType(typeof(ApiResponse<AlertResponse>), StatusCodes.Status200OK)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status404NotFound)] [ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status404NotFound)]
[ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status409Conflict)] [ProducesResponseType(typeof(ApiResponse<object>), StatusCodes.Status409Conflict)]
public async Task<IActionResult> Resolve(Guid id) public async Task<IActionResult> Resolve(Guid id)
{ {
var alert = await _alerts.ResolveAsync(id); var alert = await _alerts.ResolveAsync(id);
return Ok(ApiResponse<ClinicalAlert>.Ok(alert)); return Ok(ApiResponse<AlertResponse>.Ok(alert));
} }
/// <summary> /// <summary>
@@ -39,6 +39,7 @@ public static class DataLakeEventParser
AlertType : GetString(d, "alertType"), AlertType : GetString(d, "alertType"),
Severity : GetString(d, "severity"), Severity : GetString(d, "severity"),
Details : GetString(d, "details"), Details : GetString(d, "details"),
ExplanationJson: GetJsonObjectString(d, "explanation"),
TriggeredAt : GetTimestampString(d, "triggeredAt"), TriggeredAt : GetTimestampString(d, "triggeredAt"),
KafkaPartition : partition, KafkaPartition : partition,
KafkaOffset : offset); KafkaOffset : offset);
@@ -78,6 +79,13 @@ public static class DataLakeEventParser
} }
} }
private static string GetJsonObjectString(JsonElement d, string name)
{
if (!TryGetProperty(d, name, out var prop) || prop.ValueKind != JsonValueKind.Object)
return "";
return prop.GetRawText();
}
private static string GetString(JsonElement d, string primary, string? alternate = null) private static string GetString(JsonElement d, string primary, string? alternate = null)
{ {
if (TryGetProperty(d, primary, out var prop)) if (TryGetProperty(d, primary, out var prop))
@@ -49,6 +49,7 @@ public static class ParquetFileBuilder
new DataField<string>("alert_type"), new DataField<string>("alert_type"),
new DataField<string>("severity"), new DataField<string>("severity"),
new DataField<string>("details"), new DataField<string>("details"),
new DataField<string>("explanation_json"),
new DataField<string>("triggered_at"), new DataField<string>("triggered_at"),
new DataField<int>("kafka_partition"), new DataField<int>("kafka_partition"),
new DataField<long>("kafka_offset") new DataField<long>("kafka_offset")
@@ -65,9 +66,10 @@ public static class ParquetFileBuilder
await rg.WriteColumnAsync(new DataColumn(f[3], rows.Select(r => r.AlertType).ToArray())); await rg.WriteColumnAsync(new DataColumn(f[3], rows.Select(r => r.AlertType).ToArray()));
await rg.WriteColumnAsync(new DataColumn(f[4], rows.Select(r => r.Severity).ToArray())); await rg.WriteColumnAsync(new DataColumn(f[4], rows.Select(r => r.Severity).ToArray()));
await rg.WriteColumnAsync(new DataColumn(f[5], rows.Select(r => r.Details).ToArray())); await rg.WriteColumnAsync(new DataColumn(f[5], rows.Select(r => r.Details).ToArray()));
await rg.WriteColumnAsync(new DataColumn(f[6], rows.Select(r => r.TriggeredAt).ToArray())); await rg.WriteColumnAsync(new DataColumn(f[6], rows.Select(r => r.ExplanationJson).ToArray()));
await rg.WriteColumnAsync(new DataColumn(f[7], rows.Select(r => r.KafkaPartition).ToArray())); await rg.WriteColumnAsync(new DataColumn(f[7], rows.Select(r => r.TriggeredAt).ToArray()));
await rg.WriteColumnAsync(new DataColumn(f[8], rows.Select(r => r.KafkaOffset).ToArray())); await rg.WriteColumnAsync(new DataColumn(f[8], rows.Select(r => r.KafkaPartition).ToArray()));
await rg.WriteColumnAsync(new DataColumn(f[9], rows.Select(r => r.KafkaOffset).ToArray()));
} }
return ms.ToArray(); return ms.ToArray();
} }
@@ -7,5 +7,7 @@ public class ClinicalAlertDocument
public string AlertType { get; set; } = null!; public string AlertType { get; set; } = null!;
public string Severity { get; set; } = null!; public string Severity { get; set; } = null!;
public string Status { get; set; } = null!; public string Status { get; set; } = null!;
public string Details { get; set; } = string.Empty;
public string? NarrativeSummary { get; set; }
public DateTimeOffset TriggeredAt { get; set; } public DateTimeOffset TriggeredAt { get; set; }
} }
@@ -5,6 +5,7 @@ public sealed record AlertRow(
string AlertType, string AlertType,
string Severity, string Severity,
string Details, string Details,
string ExplanationJson,
string TriggeredAt, string TriggeredAt,
int KafkaPartition, int KafkaPartition,
long KafkaOffset long KafkaOffset
@@ -85,7 +85,7 @@ public class AlertService : IAlertService
return AlertResponseMapper.ToResponse(alert); return AlertResponseMapper.ToResponse(alert);
} }
public async Task<ClinicalAlert> AcknowledgeAsync(Guid id, AcknowledgeAlertRequest req) public async Task<AlertResponse> AcknowledgeAsync(Guid id, AcknowledgeAlertRequest req)
{ {
if (!_currentUser.IsAuthenticated) if (!_currentUser.IsAuthenticated)
throw new ValidationException("Authentication required.", "AUTH_REQUIRED"); throw new ValidationException("Authentication required.", "AUTH_REQUIRED");
@@ -164,7 +164,7 @@ public class AlertService : IAlertService
reason: acknowledgmentNote); reason: acknowledgmentNote);
} }
return alert; return AlertResponseMapper.ToResponse(alert);
} }
public async Task<AlertFeedback> SubmitFeedbackAsync( public async Task<AlertFeedback> SubmitFeedbackAsync(
@@ -234,7 +234,7 @@ public class AlertService : IAlertService
return overrideMinutes ?? defaultWindowMinutes; return overrideMinutes ?? defaultWindowMinutes;
} }
public async Task<ClinicalAlert> ResolveAsync(Guid id) public async Task<AlertResponse> ResolveAsync(Guid id)
{ {
var alert = await _db.ClinicalAlerts.FindAsync(id); var alert = await _db.ClinicalAlerts.FindAsync(id);
if (alert is null) if (alert is null)
@@ -256,7 +256,7 @@ public class AlertService : IAlertService
previousValue: new { status = AlertStatus.Acknowledged.ToDbString() }, previousValue: new { status = AlertStatus.Acknowledged.ToDbString() },
newValue: new { status = alert.Status.ToDbString() }); newValue: new { status = alert.Status.ToDbString() });
return alert; return AlertResponseMapper.ToResponse(alert);
} }
public async Task ApplySyncedAcknowledgmentAsync( public async Task ApplySyncedAcknowledgmentAsync(
@@ -6,6 +6,11 @@ using VigilCare.ClinicalContracts.Sync;
public class ClinicalSyncBatchProcessor public class ClinicalSyncBatchProcessor
{ {
private static readonly JsonSerializerOptions ExplanationJsonOptions = new()
{
PropertyNameCaseInsensitive = true
};
private readonly AppDbContext _db; private readonly AppDbContext _db;
private readonly IObservationService _observations; private readonly IObservationService _observations;
private readonly IAlertService _alerts; private readonly IAlertService _alerts;
@@ -163,6 +168,7 @@ public class ClinicalSyncBatchProcessor
AlertType = AlertTypeExtensions.FromDbString(alert.AlertType), AlertType = AlertTypeExtensions.FromDbString(alert.AlertType),
Severity = AlertSeverityExtensions.FromDbString(alert.Severity), Severity = AlertSeverityExtensions.FromDbString(alert.Severity),
Details = alert.Details, Details = alert.Details,
Explanation = ParseExplanation(alert.ExplanationJson),
Status = AlertStatus.Open, Status = AlertStatus.Open,
TriggeredAt = alert.GeneratedAt TriggeredAt = alert.GeneratedAt
}; };
@@ -172,7 +178,7 @@ public class ClinicalSyncBatchProcessor
{ {
Id = Guid.NewGuid(), Id = Guid.NewGuid(),
Topic = "alert.generated", Topic = "alert.generated",
Payload = JsonSerializer.Serialize(new Payload = ClinicalAlertFactory.SerializeOutboxPayload(new
{ {
alertId = clinicalAlert.Id, alertId = clinicalAlert.Id,
encounterId = alert.EncounterId, encounterId = alert.EncounterId,
@@ -180,6 +186,7 @@ public class ClinicalSyncBatchProcessor
alertType = alert.AlertType, alertType = alert.AlertType,
severity = alert.Severity, severity = alert.Severity,
details = alert.Details, details = alert.Details,
explanation = clinicalAlert.Explanation,
syncedFromGateway = true, syncedFromGateway = true,
triggeredAt = alert.GeneratedAt, triggeredAt = alert.GeneratedAt,
partitionKey = alert.EncounterId.ToString() partitionKey = alert.EncounterId.ToString()
@@ -231,4 +238,9 @@ public class ClinicalSyncBatchProcessor
_db.ClinicalSyncConflicts.Add(new ClinicalSyncConflict(batchId, clientRef, itemType, reason)); _db.ClinicalSyncConflicts.Add(new ClinicalSyncConflict(batchId, clientRef, itemType, reason));
await _db.SaveChangesAsync(ct); await _db.SaveChangesAsync(ct);
} }
private static AlertExplanation? ParseExplanation(string? explanationJson) =>
string.IsNullOrWhiteSpace(explanationJson)
? null
: JsonSerializer.Deserialize<AlertExplanation>(explanationJson, ExplanationJsonOptions);
} }
@@ -8,9 +8,9 @@ public interface IAlertService
Task<AlertResponse> GetByIdAsync(Guid id); Task<AlertResponse> GetByIdAsync(Guid id);
Task<ClinicalAlert> AcknowledgeAsync(Guid id, AcknowledgeAlertRequest req); Task<AlertResponse> AcknowledgeAsync(Guid id, AcknowledgeAlertRequest req);
Task<ClinicalAlert> ResolveAsync(Guid id); Task<AlertResponse> ResolveAsync(Guid id);
Task ApplySyncedAcknowledgmentAsync(Guid alertId, SyncedAlertAcknowledgment ack, CancellationToken ct); Task ApplySyncedAcknowledgmentAsync(Guid alertId, SyncedAlertAcknowledgment ack, CancellationToken ct);
Task ApplySyncedResolutionAsync(Guid alertId, SyncedAlertResolution resolve, CancellationToken ct); Task ApplySyncedResolutionAsync(Guid alertId, SyncedAlertResolution resolve, CancellationToken ct);
Task<AlertFeedback> SubmitFeedbackAsync(Guid alertId, AlertFeedbackType type, string? comment); Task<AlertFeedback> SubmitFeedbackAsync(Guid alertId, AlertFeedbackType type, string? comment);
+10 -10
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@@ -24,16 +24,16 @@ Each priority is scored on three dimensions using a 1-10 scale.
## Summary Matrix ## Summary Matrix
| Phase | Feature | Commercial | Clinical | Composite | Dependencies | | Phase | Feature | Commercial | Clinical | Composite | Dependencies | Status |
|-------|------------------------------------|------------|----------|-----------|--------------------| |-------|------------------------------------|------------|----------|-----------|--------------------|-----------|
| 33 | Alert Quality Analytics | 10 | 9 | 9.5 | None | | 33 | Alert Quality Analytics | 10 | 9 | 9.5 | None | — |
| 34 | Explainable Alerts | 8 | 10 | 9.0 | None | | 34 | Explainable Alerts | 8 | 10 | 9.0 | None | Complete |
| 35 | Alert Lifecycle Analytics | 9 | 7 | 8.0 | Phase 33 | | 35 | Alert Lifecycle Analytics | 9 | 7 | 8.0 | Phase 33 | — |
| 36 | Role-Based Alert Routing | 8 | 9 | 8.5 | Phase 33, 35 | | 36 | Role-Based Alert Routing | 8 | 9 | 8.5 | Phase 33, 35 | — |
| 37 | Alert Bundling and Correlation | 7 | 8 | 7.5 | Phase 34 | | 37 | Alert Bundling and Correlation | 7 | 8 | 7.5 | Phase 34 | — |
| 38 | Adaptive Threshold Recommendations | 9 | 6 | 7.5 | Phase 33, 35 (months of data) | | 38 | Adaptive Threshold Recommendations | 9 | 6 | 7.5 | Phase 33, 35 (months of data) | — |
| 39 | Scoring Framework Abstraction | 5 | 4 | 4.5 | None | | 39 | Scoring Framework Abstraction | 5 | 4 | 4.5 | None | — |
| 40 | MEWS | 5 | 5 | 5.0 | Phase 39 | | 40 | MEWS | 5 | 5 | 5.0 | Phase 39 | — |
--- ---
+1
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@@ -90,6 +90,7 @@ offsets are not committed and events are re-read on the next start.
| `alert_type` | `alertType` | e.g. `WARNING_HEART_RATE`, `CRITICAL_HEART_RATE` | | `alert_type` | `alertType` | e.g. `WARNING_HEART_RATE`, `CRITICAL_HEART_RATE` |
| `severity` | `severity` | e.g. `Warning`, `Critical` | | `severity` | `severity` | e.g. `Warning`, `Critical` |
| `details` | `details` | Required on all new alert producers; parser defaults to `""` if absent | | `details` | `details` | Required on all new alert producers; parser defaults to `""` if absent |
| `explanation_json` | `explanation` | Optional JSON object (Phase 34); null for threshold-only alerts |
| `triggered_at` | `triggeredAt` | ISO-8601 | | `triggered_at` | `triggeredAt` | ISO-8601 |
Phase 11 aligned warning and sepsis outbox producers with critical ingest alerts by Phase 11 aligned warning and sepsis outbox producers with critical ingest alerts by
+2 -2
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@@ -980,7 +980,7 @@ The Vue ward dashboard (`vigilcare-dashboard/`) implements this lifecycle throug
| Patient Detail | `GET /encounters/{id}`, `GET .../news2/current`, `GET .../sofa/current`, `GET .../medications`, `GET .../orders`, `GET .../sepsis-bundle/current`, `GET .../observations`, `GET .../news2/history` | | Patient Detail | `GET /encounters/{id}`, `GET .../news2/current`, `GET .../sofa/current`, `GET .../medications`, `GET .../orders`, `GET .../sepsis-bundle/current`, `GET .../observations`, `GET .../news2/history` |
| Alert Center | `GET /alerts?status=OPEN` | | Alert Center | `GET /alerts?status=OPEN` |
| Alert actions | `POST /alerts/{id}/acknowledge`, `POST /alerts/{id}/resolve` | | Alert actions | `POST /alerts/{id}/acknowledge`, `POST /alerts/{id}/resolve` |
| Alert reasoning | `alert.details` from alert list + client-side medication window from `GET .../medications` | | Alert reasoning | `alert.explanation` from alert list/GET (narrative, score contributors, trend, medication context); legacy alerts fall back to `alert.details` |
--- ---
@@ -996,7 +996,7 @@ The Vue ward dashboard (`vigilcare-dashboard/`) implements this lifecycle throug
| qSOFA screen | No | PostgreSQL → Kafka → sepsis engine (reads Redis) → PostgreSQL | `GET .../alerts`, `GET .../qsofa/current` | | qSOFA screen | No | PostgreSQL → Kafka → sepsis engine (reads Redis) → PostgreSQL | `GET .../alerts`, `GET .../qsofa/current` |
| GCS score / alert | No | PostgreSQL → Kafka → GCS scorer → PostgreSQL | `GET .../gcs/current`, `GET .../alerts` | | GCS score / alert | No | PostgreSQL → Kafka → GCS scorer → PostgreSQL | `GET .../gcs/current`, `GET .../alerts` |
| Trend alert | No | PostgreSQL → Kafka → trend analyzer (reads Redis history) → PostgreSQL | `GET .../alerts` | | Trend alert | No | PostgreSQL → Kafka → trend analyzer (reads Redis history) → PostgreSQL | `GET .../alerts` |
| Medication annotation on alert | No — applied at alert creation | Kafka consumer reads recent meds from PostgreSQL | `GET .../alerts` → read `details` field | | Medication annotation on alert | No — applied at alert creation | Kafka consumer reads recent meds from PostgreSQL | `GET .../alerts` → read `explanation.medicationContext` or legacy `details` |
| Search index updated | No | PostgreSQL → Kafka → ES indexer → Elasticsearch | `GET /analytics/...` endpoints | | Search index updated | No | PostgreSQL → Kafka → ES indexer → Elasticsearch | `GET /analytics/...` endpoints |
| Data lake file written | No | PostgreSQL → Kafka → data lake writer → MinIO (Parquet); offsets only committed for successful partition uploads | MinIO bucket `vigilcare` | | Data lake file written | No | PostgreSQL → Kafka → data lake writer → MinIO (Parquet); offsets only committed for successful partition uploads | MinIO bucket `vigilcare` |
| Clinician paged | No | Kafka → notification publisher → RabbitMQ paging queue | Alert `status` field | | Clinician paged | No | Kafka → notification publisher → RabbitMQ paging queue | Alert `status` field |
+4
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@@ -1,5 +1,9 @@
import { api } from './client' import { api } from './client'
export function fetchAlertById(alertId) {
return api.get(`/api/v1/alerts/${alertId}`)
}
export function fetchAlerts(encounterId, status) { export function fetchAlerts(encounterId, status) {
const params = new URLSearchParams() const params = new URLSearchParams()
if (status) params.set('status', status) if (status) params.set('status', status)
@@ -9,6 +9,7 @@ import { useAlertStore } from '@/stores/alerts'
import { useScoringStore } from '@/stores/scoring' import { useScoringStore } from '@/stores/scoring'
import * as encountersApi from '@/api/encounters' import * as encountersApi from '@/api/encounters'
import * as clinicalApi from '@/api/clinical' import * as clinicalApi from '@/api/clinical'
import * as alertsApi from '@/api/alerts'
import PatientBanner from '@/components/patient/PatientBanner.vue' import PatientBanner from '@/components/patient/PatientBanner.vue'
import VitalsPanel from '@/components/patient/VitalsPanel.vue' import VitalsPanel from '@/components/patient/VitalsPanel.vue'
import ScoresPanel from '@/components/patient/ScoresPanel.vue' import ScoresPanel from '@/components/patient/ScoresPanel.vue'
@@ -157,8 +158,12 @@ async function loadAll() {
} }
} }
function onSelectAlert(alert) { async function onSelectAlert(alert) {
selectedAlert.value = alert try {
selectedAlert.value = await alertsApi.fetchAlertById(alert.id)
} catch {
selectedAlert.value = alert
}
jumpToTimestamp(alert.triggeredAt) jumpToTimestamp(alert.triggeredAt)
} }